Evidence map›Paper›PMID 41533567›Full record

ArticleNucleic acids research2026

Structural insights into the Bre1-Lge1 and RNF20/RNF40-WAC interactions critical for H2B ubiquitination.

Meng Shi, Xuejie Wang, Hang Zhang, Yajiao Wen, Qianqian Liu, Pu Chen, Xuefeng Chen, Song Xiang

Abstract read
In one paragraph

Article in Nucleic acids research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Meng ShiDepartment of Biochemistry and Molecular Biology, Key Laboratory of Immune Microenvironment and Disease (Ministry of Education), The province and ministry co-sponsored collaborative innovation center for medical epigenetics, State Key Laboratory of Experimental Hematology, Tianjin Medical University, Tianjin 300070, P.R. China.
Xuejie WangDepartment of Nephrology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Children and Adolescents' Health and Diseases, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatric Metabolism and Inflammatory Diseases, Genome Stability and Pediatric Cancer Center, Chongqing 400015, P.R. China.
Hang ZhangState Key Laboratory of Microbial Technology, Shandong University, Qingdao 266237, P.R. China.
Yajiao WenDepartment of Biochemistry and Molecular Biology, Key Laboratory of Immune Microenvironment and Disease (Ministry of Education), The province and ministry co-sponsored collaborative innovation center for medical epigenetics, State Key Laboratory of Experimental Hematology, Tianjin Medical University, Tianjin 300070, P.R. China.
Qianqian LiuDepartment of Biochemistry and Molecular Biology, Key Laboratory of Immune Microenvironment and Disease (Ministry of Education), The province and ministry co-sponsored collaborative innovation center for medical epigenetics, State Key Laboratory of Experimental Hematology, Tianjin Medical University, Tianjin 300070, P.R. China.
Pu ChenDepartment of Biochemistry and Molecular Biology, Key Laboratory of Immune Microenvironment and Disease (Ministry of Education), The province and ministry co-sponsored collaborative innovation center for medical epigenetics, State Key Laboratory of Experimental Hematology, Tianjin Medical University, Tianjin 300070, P.R. China.
Xuefeng ChenDepartment of Nephrology, Children's Hospital of Chongqing Medical University, National Clinical Research Center for Children and Adolescents' Health and Diseases, Ministry of Education Key Laboratory of Child Development and Disorders, Chongqing Key Laboratory of Pediatric Metabolism and Inflammatory Diseases, Genome Stability and Pediatric Cancer Center, Chongqing 400015, P.R. China.
Song XiangDepartment of Biochemistry and Molecular Biology, Key Laboratory of Immune Microenvironment and Disease (Ministry of Education), The province and ministry co-sponsored collaborative innovation center for medical epigenetics, State Key Laboratory of Experimental Hematology, Tianjin Medical University, Tianjin 300070, P.R. China.ORCID 0000-0001-9314-4684

Funding

Brain-Gain Plan of New ChongqingFoundation of Tianjin Science and Technology Commission 23ZYCGSY00750National Key Research and Development Program of China 2021YFA1100500National Key Research and Development Program of China 2023YFA0913400Natural Science Foundation of China 32271259Natural Science Foundation of China 32400430Natural Science Foundation of China 32570637Scientific Research Project of Tianjin Education Commission 2021KJ249
6 · The paper itself

Abstract

The mono-ubiquitination of the histone protein H2B (H2BUb1) has important functions in transcription, DNA repair, and other chromatin-related processes. The reaction is catalyzed by Bre1 and the homologous RNF20/RNF40 complex in the budding yeast and human cells, respectively, and is promoted by their respective interaction partners, Lge1 and WAC. The mechanism of the Bre1-Lge1 and RNF20/RNF40-WAC interactions is poorly understood. Here, we present the crystal structure of the Bre1-Lge1 complex and an AlphaFold predicted structure model of the RNF20/RNF40 complex bound with WAC, as well as in vitro and in vivo experiments to assess the interaction mechanism and function. Our study revealed extensive Bre1-Lge1 and RNF20/RNF40-WAC interfaces and a structural homology shared by these interfaces, but completely different sets of key electrostatic interactions at these interfaces that are crucial for the binding and encode the binding specificity. We further found that these interactions play critical roles in the Bre1-catalyzed H2BUb1 reaction and processes it regulates. Our data provide insights into the mechanism of the Bre1-Lge1 and RNF20/RNF40-WAC interactions.

Indexed as

HistonesSaccharomyces cerevisiae ProteinsTranscription FactorsUbiquitinationUbiquitin-Protein LigasesBinding SitesCrystallography, X-RayHumansModels, MolecularProtein BindingSaccharomyces cerevisiaeBre1 protein, S cerevisiaeHistonesRNF20 protein, humanRNF40 protein, humanSaccharomyces cerevisiae ProteinsTranscription FactorsUbiquitin-Protein Ligases

Identifiers

PMID41533567
PMCPMC12802937

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.