Evidence map›Paper›PMID 41531766›Full record

ReviewChemical science2026

Explainable artificial intelligence for molecular design in pharmaceutical research.

Alec Lamens, Jürgen Bajorath

Abstract readReview
In one paragraph

Review in Chemical science, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Alec LamensDepartment of Life Science Informatics and Data Science, B-IT, LIMES Program Unit Chemical Biology and Medicinal Chemistry, University of Bonn Friedrich-Hirzebruch-Allee 5/6 D-53115 Bonn Germany bajorath@bit.uni-bonn.de +49-228-7369-100.ORCID https://orcid.org/0000-0001-6409-3216
Jürgen BajorathDepartment of Life Science Informatics and Data Science, B-IT, LIMES Program Unit Chemical Biology and Medicinal Chemistry, University of Bonn Friedrich-Hirzebruch-Allee 5/6 D-53115 Bonn Germany bajorath@bit.uni-bonn.de +49-228-7369-100.ORCID https://orcid.org/0000-0002-0557-5714

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rise of artificial intelligence (AI) has taken machine learning (ML) in molecular design to a new level. As ML increasingly relies on complex deep learning frameworks, the inability to understand predictions of black-box models has become a topical issue. Consequently, there is strong interest in the field of explainable AI (XAI) to bridge the gap between black-box models and the acceptance of their predictions, especially at interfaces with experimental disciplines. Therefore, XAI methods must go beyond extracting learning patterns from ML models and present explanations of predictions in a human-centered, transparent, and interpretable manner. In this Perspective, we examine current challenges and opportunities for XAI in molecular design and evaluate the benefits of incorporating domain-specific knowledge into XAI approaches for model refinement, experimental design, and hypothesis testing. In this context, we also discuss the current limitations in evaluating results from chemical language models that are increasingly used in molecular design and drug discovery.

Identifiers

PMID41531766
PMCPMC12794337

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.