Evidence map›Paper›PMID 41531392›Full record

ReviewChembiochem : a European journal of chemical biology2026

Advances and Applications of Spatial Proteomics: From Organellar Maps to Clinical Translation.

Chiara Bernardini, Maike Däther, Franziska R Traube

Abstract readReview
In one paragraph

Review in Chembiochem : a European journal of chemical biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Insights into the maternal-fetal interface from spatial multi-omics.Frontiers in cell and developmental biology · 2026
    Review
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Chiara BernardiniInstitute of Biochemistry, Universität Stuttgart, Allmandring 31, 70569, Stuttgart, Germany.ORCID https://orcid.org/0009-0000-8604-225X
Maike DätherFaculty of Chemistry and Pharmacy, Ludwig-Maximilians-Universität München, Butenandtstr. 5-13, 81377, Munich, Germany.ORCID https://orcid.org/0000-0002-7423-0613
Franziska R TraubeInstitute of Biochemistry, Universität Stuttgart, Allmandring 31, 70569, Stuttgart, Germany.ORCID https://orcid.org/0000-0002-5691-1941

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Spatial proteomics has emerged as a powerful approach to systematically map the subcellular localization of thousands of proteins in parallel, providing insights into organelle composition, protein trafficking, and context-dependent relocalization events. Building on advances in mass spectrometry sensitivity, and acquisition as well as quantification strategies, organelle-resolved protein maps can now be generated with unprecedented depth and resolution, and recent workflows have expanded the applicability of spatial proteomics to diverse experimental and challenging contexts. Complementary bioinformatic pipelines enable the assignment of proteins to compartments, the detection of distribution shifts, and the integration of spatial data with other omics layers. Beyond fundamental cell biology, the technology holds great potential for clinical research, where limited input material and the complexity of primary samples pose specific challenges. Emerging low-input preparation methods, antibody-based organelle enrichment, and microscopy-guided approaches offer promising solutions, while robust, marker-independent data analysis will be essential to handle the biological variability of patient-derived samples. As protocols become more automated, low-input compatible, and bioinformatically standardized, spatial proteomics is poised to become a valuable tool for mechanistic disease research, biomarker discovery, and therapeutic target identification.

Indexed as

OrganellesProteomicsTranslational Research, BiomedicalAnimalsHumansMass Spectrometryfractionationmass spectrometrymicroscopy‐guided segmentationorganelle profilingprotein translocationsproteome profiling

Identifiers

PMID41531392
PMCPMC12800893

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.