Evidence map›Paper›PMID 41530498›Full record

ArticleNPJ precision oncology2026

AI-powered segmentation and prognosis with missing MRI in pediatric brain tumors.

Dimosthenis Chrysochoou, Deep B Gandhi, Sahand Adib, Ariana M Familiar, Bhavyasri Vunnava, Sanaz Varshochi, Neda Khalili, Nastaran Khalili, Jeffrey B Ware, Wenxin Tu and 13 more

Abstract read
In one paragraph

Article in NPJ precision oncology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Dimosthenis ChrysochoouUniversity of Pennsylvania, Department of Bioengineering, Philadelphia, PA, USA.
Deep B GandhiCenter for Data-Driven Discovery in Biomedicine (D3b), Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Sahand AdibCenter for Data-Driven Discovery in Biomedicine (D3b), Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Ariana M FamiliarCenter for Data-Driven Discovery in Biomedicine (D3b), Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Bhavyasri VunnavaCenter for Data-Driven Discovery in Biomedicine (D3b), Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Sanaz VarshochiCenter for Data-Driven Discovery in Biomedicine (D3b), Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Neda KhaliliCenter for Data-Driven Discovery in Biomedicine (D3b), Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Nastaran KhaliliCenter for Data-Driven Discovery in Biomedicine (D3b), Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Jeffrey B WareDepartment of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Wenxin TuCenter for Data-Driven Discovery in Biomedicine (D3b), Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Paarth JainCenter for Data-Driven Discovery in Biomedicine (D3b), Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Hannah AndersonCenter for Data-Driven Discovery in Biomedicine (D3b), Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Shuvanjan HaldarCenter for Data-Driven Discovery in Biomedicine (D3b), Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Phillip B StormCenter for Data-Driven Discovery in Biomedicine (D3b), Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Andrea FransonDepartment of Pediatrics, University of Michigan Medical School, Ann Arbor, MI, USA.
Michael PradosDepartment of Neurological Surgery and Department of Pediatrics, University of California San Francisco, San Francisco, CA, USA.
Cassie KlineDivision of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Sabine MuellerDepartment of Neurology and Pediatrics, University of California San Francisco, San Francisco, CA, USA.
Adam ResnickCenter for Data-Driven Discovery in Biomedicine (D3b), Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Arastoo VossoughCenter for Data-Driven Discovery in Biomedicine (D3b), Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Christos DavatzikosDepartment of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Ali NabavizadehCenter for Data-Driven Discovery in Biomedicine (D3b), Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Anahita Fathi KazerooniCenter for Data-Driven Discovery in Biomedicine (D3b), Children's Hospital of Philadelphia, Philadelphia, PA, USA. anahitaf@upenn.edu.

Funding

WORK ORDER 126643 B539 EXPAND IC SUITE75N91019D00024 · NIAID · LEIDOS BIOMEDICAL RESEARCH, INC. · PI BRISCOE, LYNN · 2019 to 2025
$3932.6M
User-ready tools and scalable workflows for INCLUDE datasets in the cloud: advancing brain imaging data management and analyticsU2CHL156291 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI Adam Cain Resnick · 2020 to 2026
$43.8M
NCI NIH HHS 75N91019D00024NHLBI NIH HHS U2C HL156291
6 · The paper itself

Abstract

Brain MRI is the primary imaging modality for pediatric brain tumors, yet incomplete acquisitions are common, hindering the clinical utility of existing deep learning models for tumor segmentation and prognosis. These models are typically trained on complete MRI sequences and exhibit performance degradation when MRI sequences are missing at test time. In this retrospective study of 715 patients from the Children's Brain Tumor Network and BraTS-PEDs, and 43 patients with 157 longitudinal MRIs from PNOC003/007 clinical trials, we developed strategies for handling missing sequences. Methods included a dropout-trained segmentation model that randomly omitted FLAIR and/or T1w inputs during training, a generative model for image synthesis, copy-substitution heuristics, and zeroed inputs. The dropout model achieved robust segmentation under missing MRI, with ≤0.04 Dice drop relative to complete-input and stable prognostic accuracy in survival analysis using model-derived tumor volumes and clinical covariates. Generative synthesis achieved high image quality (SSIM > 0.90) and removed artifacts, benefiting visual interpretability. Together, these approaches can facilitate broader deployment of AI tools in real-world pediatric neuro-oncology settings.

Identifiers

PMID41530498
PMCPMC12894653

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.