Evidence map›Paper›PMID 41530166›Full record

ArticleNature communications2026

Cobamide-producing microbes as a model for understanding general nutritional interdependencies in soil food webs.

Qi Zhang, Bingfeng Chen, Zhenyan Zhang, Yitian Yu, Mingkang Jin, Tao Lu, Ziyao Zhang, Qian Pang, Nuohan Xu, Jianqiang Sun and 6 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Qi ZhangInstitute for Advanced Study, Shaoxing University, Shaoxing, PR China.ORCID http://orcid.org/0000-0002-0052-3552
Bingfeng ChenCollege of Environment, Zhejiang University of Technology, Hangzhou, PR China.
Zhenyan ZhangInstitute for Advanced Study, Shaoxing University, Shaoxing, PR China.
Yitian YuCollege of Environment, Zhejiang University of Technology, Hangzhou, PR China.
Mingkang JinState Key Laboratory of Urban and Regional Ecology, Research Center for Eco-environmental Sciences, Chinese Academy of Sciences, Beijing, PR China.
Tao LuCollege of Environment, Zhejiang University of Technology, Hangzhou, PR China.ORCID http://orcid.org/0000-0002-2030-3813
Ziyao ZhangCollege of Environment, Zhejiang University of Technology, Hangzhou, PR China.
Qian PangCollege of Environment, Zhejiang University of Technology, Hangzhou, PR China.
Nuohan XuInstitute for Advanced Study, Shaoxing University, Shaoxing, PR China.ORCID http://orcid.org/0009-0008-4350-5689
Jianqiang SunCollege of Environment, Zhejiang University of Technology, Hangzhou, PR China.
Jun ChenLaboratory of Pollution Exposure and Health Intervention Technology, Interdisciplinary Research Academy, Zhejiang Shuren University, Hangzhou, PR China.ORCID http://orcid.org/0000-0003-2695-4673
Jichen WangState Key Laboratory of Urban and Regional Ecology, Research Center for Eco-environmental Sciences, Chinese Academy of Sciences, Beijing, PR China.
Dong ZhuKey Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, PR China. dzhu@iue.ac.cn.ORCID http://orcid.org/0000-0002-0826-6423
Haifeng QianInstitute for Advanced Study, Shaoxing University, Shaoxing, PR China. hfqian@usx.edu.cn.ORCID http://orcid.org/0000-0003-0807-9991
Josep PenuelasCSIC, Global Ecology Unit CREAF-CSIC-UAB, Barcelona, Catalonia, Spain.ORCID http://orcid.org/0000-0002-7215-0150
Yong-Guan ZhuState Key Laboratory of Urban and Regional Ecology, Research Center for Eco-environmental Sciences, Chinese Academy of Sciences, Beijing, PR China.ORCID http://orcid.org/0000-0003-3861-8482

Funding

National Natural Science Foundation of China (National Science Foundation of China) 42307158Natural Science Foundation of Zhejiang Province (Zhejiang Provincial Natural Science Foundation) 2022C02029
6 · The paper itself

Abstract

Nutrient crossfeeding critically governs microbiome-host interactions and ecosystem stability. Cobamides, synthesized only by prokaryotes, offer a powerful and tractable model for studying nutrient-mediated interdependencies in soil food webs; however, their ecological role in sustaining soil health remains unclear. Here, we construct the Soil Cobamide Producer database (SCP v.1.0) by integrating over 48,000 metagenomic and genomic datasets from 1,123 sampling sites. This database catalogs phylogenetically diverse prokaryotes (19 phyla, 302 genera) with cobamide biosynthetic potential. Using this resource, we identify host-specific colonization patterns of cobamide-producing microbes in fauna. These microbes also carry diverse functional traits that may contribute to trophic cascades and microbial community stability. In an Enchytraeid model, these colonizers support host development, modulate gene expression, and promote gut stability through transkingdom interactions, with cobamide biosynthesis serving as one representative trait among multiple microbial functions. At macroecological scales, cobamide-producing microbes occur across relatively high trophic levels, reflecting a broader principle of nutrient transfer that may also apply to other essential metabolites. This framework provides a general basis for studying nutritional microbes in soil food webs and advances One Health research.

Indexed as

BacteriaCobamidesFood ChainSoil MicrobiologyAnimalsMicrobiotaPhylogenySoilCobamidesSoil

Identifiers

PMID41530166
PMCPMC12891699

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.