Evidence map›Paper›PMID 41527541›Full record

ArticleEcology and evolution2026

eDNA Metabarcoding Reveals Microbial Community Composition in Tropical Mangrove Forests in Makassar, Indonesia.

Siti Halimah Larekeng, Mohammad Basyuni, Andi Aznan Aznawi, Irmawati Irmawati, Iswanto Iswanto, Muhammad Saldy, Alfian Mubaraq, Bejo Slamet, Elham Sumarga, Virni Budi Arifanti and 1 more

Abstract read
In one paragraph

Article in Ecology and evolution, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Siti Halimah LarekengKARST Bioprospecting and Society, Institute of Research and Community Service Hasanuddin University Makassar Indonesia.
Mohammad BasyuniCenter of Excellence for Mangrove Universitas Sumatera Utara Medan Indonesia.ORCID https://orcid.org/0000-0003-1120-8571
Andi Aznan AznawiCenter of Excellence for Mangrove Universitas Sumatera Utara Medan Indonesia.
Irmawati IrmawatiFaculty of Marine Science and Fisheries Hasanuddin University Makassar Indonesia.
Iswanto IswantoFaculty of Forestry Hasanuddin University Makassar Indonesia.
Muhammad SaldyFaculty of Forestry Hasanuddin University Makassar Indonesia.
Alfian MubaraqCenter of Excellence for Mangrove Universitas Sumatera Utara Medan Indonesia.
Bejo SlametCenter of Excellence for Mangrove Universitas Sumatera Utara Medan Indonesia.
Elham SumargaSchool of Life Sciences and Technology Institut Teknologi Bandung Bandung Indonesia.
Virni Budi ArifantiResearch Center for Ecology National Research and Innovation Agency Cibinong Indonesia.
Hayssam M AliDepartment of Botany and Microbiology, College of Science King Saud University Riyadh Saudi Arabia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mangrove ecosystems are critical coastal habitats that support diverse microbial communities essential for nutrient cycling, organic matter decomposition, and ecosystem stability. Despite their ecological importance, microbial diversity in tropical mangroves remains poorly characterized, particularly in Indonesia. This study employed environmental DNA (eDNA) metabarcoding via 18S rRNA markers to assess microbial species diversity in the waters of the Lantebung Mangrove Forest, Makassar, Indonesia. Water samples were collected from two locations and analyzed through high-throughput sequencing and bioinformatic processing via QIIME 2. A total of 103 microbial species were identified across five kingdoms: Protista (48.5%), Chromista (28.0%), Animalia (12.6%), Bacteria (7.8%), and Fungi (2.9%). The dominant taxa included photosynthetic protists and chromists, along with functionally important bacterial and fungal species. Species richness and relative abundance differed among the sampling sites, reflecting environmental gradients such as light availability, salinity, and nutrient flow. Notably, Station P1 (more exposed) presented greater species richness, whereas Station P2 (within the mangrove canopy) presented greater individual abundance. These findings highlight the effectiveness of 18S rRNA-based metabarcoding in capturing microbial diversity and offer valuable baseline data for future ecological monitoring and conservation strategies in tropical mangrove ecosystems.

Indexed as

bioinformatics analysisconservation strategye‐DNA metabarcodingmangrove Lantebungmicrobial species

Identifiers

PMID41527541
PMCPMC12790866

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.