Evidence map›Paper›PMID 41524030›Full record

ArticleNAR genomics and bioinformatics2026

OmNI: a modular open-source framework for interactive multi-omics data integration and visualization.

Grace Potter, Jacob A Beierle, Camron Bryant, Sadhna Phanse, Carl White, Andrew Emili, Indranil Paul

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in NAR genomics and bioinformatics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Grace PotterProgram in Quantitative Oncology, Division of Oncological Sciences, Knight Cancer Institute, Oregon Health and Science University, OR 97201, United States.ORCID https://orcid.org/0000-0003-4591-6007
Jacob A BeierleThe Jackson Laboratory, Research, 600 Main Street, Bar Harbor, ME 04609,United States.
Camron BryantLaboratory of Addiction Genetics, Center for Drug Discovery, Department of Pharmaceutical Sciences, Northeastern University, MA 02115, United States.
Sadhna PhanseProgram in Quantitative Oncology, Division of Oncological Sciences, Knight Cancer Institute, Oregon Health and Science University, OR 97201, United States.
Carl WhiteProgram in Quantitative Oncology, Division of Oncological Sciences, Knight Cancer Institute, Oregon Health and Science University, OR 97201, United States.
Andrew EmiliProgram in Quantitative Oncology, Division of Oncological Sciences, Knight Cancer Institute, Oregon Health and Science University, OR 97201, United States.ORCID https://orcid.org/0000-0001-8995-246X
Indranil PaulProgram in Quantitative Oncology, Division of Oncological Sciences, Knight Cancer Institute, Oregon Health and Science University, OR 97201, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Omics Notebook Interactive (OmNI) is an R-based, open-source, and modular framework engineered for streamlined multi-omics data integration and analysis across diverse data types, incorporating interactive visualizations at each processing step. OmNI performs differential expression analysis utilizing customizable linear models, accommodating various covariates and complex experimental designs. For cross-omic layer integration, OmNI employs a modified

Indexed as

SoftwareAnimalsBrainMetabolomicsMiceMultiomicsProteomics

Identifiers

PMID41524030
PMCPMC12789801

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.