ArticleFrontiers in plant science2025
Multiomic analyses reveal transcription factors involved in the fatty acid biosynthesis pathway under cold stress in upland cotton (
Article in Frontiers in plant science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.
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1 citing paper in PubMed.
- Bivalent chromatin states and epigenetic priming in cotton: the role of H3K4me3 and H3K27me3 in cold stress memory and resilience.Epigenetics & chromatin · 2026Review
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12 authors.
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Abstract
Introduction: Chromatin accessibility is broadly implicated in plant abiotic stress responses; nevertheless, its role under cold stress in upland cotton ( Methods: Here, we integrated the transcriptomic, metabolomic, and ATAC-seq profiles of a cold-tolerant line, Xinluzao 52 (X52), and a cold-sensitive line, Dai 4554 (D4554), which were sampled before (0 h) and after (6 h) cold treatment. Results: Compared with the respective 0-h controls, the 6-h cold exposure group had specifically enriched differentially expressed genes (DEGs) related to the fatty acid metabolism pathway in X52, while no comparable enrichment was observed in D4554. Among all the DEGs from comparison groups D4554-C vs. X52-C, D4554-C vs. D4554-T, D4554-T vs. X52-T, and X52-C vs. X52-T, a total of 3, 338 differentially expressed transcription factors (TFs) were identified, of which the MYB, bHLH, NAC, and WRKY families were predominated. Coexpression analysis partitioned these TFs into nine modules and identified 24 hub TFs. Metabolomic profiling revealed that fatty acids accounted for ~10% of the differentially expressed metabolites (DEMs), and eight of the nine TF coexpression modules were strongly correlated with fatty acid pathway metabolites (|r| > 0.9,
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