Evidence map›Paper›PMID 41521468›Full record

ReviewPlant, cell & environment2026

Protoplast-Based Functional Genomics and Genome Editing: Progress, Challenges and Applications.

Jo-Wei Allison Hsieh, Fu-Hui Wu, Dian-Xuan Yang, Ai-En Wu, Ching-Ann Liu, Chang-Hung Chen, Shinn-Zong Lin, Ying-Chung Jimmy Lin, Choun-Sea Lin

Abstract readReview
In one paragraph

Review in Plant, cell & environment, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jo-Wei Allison HsiehThe Genome Center, University of California, Davis, Davis, California, USA.ORCID https://orcid.org/0000-0001-7017-3853
Fu-Hui WuAgricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan.
Dian-Xuan YangInstitute of Plant Biology, College of Life Science, National Taiwan University, Taipei, Taiwan.
Ai-En WuInstitute of Plant Biology, College of Life Science, National Taiwan University, Taipei, Taiwan.
Ching-Ann LiuNeuroscience Center, Buddhist Tzu Chi Hospital, Hualien, Taiwan.ORCID https://orcid.org/0000-0002-0392-7069
Chang-Hung ChenInstitute of Plant Biology, College of Life Science, National Taiwan University, Taipei, Taiwan.ORCID https://orcid.org/0000-0002-7583-6756
Shinn-Zong LinNeuroscience Center, Buddhist Tzu Chi Hospital, Hualien, Taiwan.ORCID https://orcid.org/0000-0002-4601-9933
Ying-Chung Jimmy LinInstitute of Plant Biology, College of Life Science, National Taiwan University, Taipei, Taiwan.ORCID https://orcid.org/0000-0001-7120-4690
Choun-Sea LinAgricultural Biotechnology Research Center, Academia Sinica, Taipei, Taiwan.ORCID https://orcid.org/0000-0001-9566-2952

Funding

Academia SinicaBuddhist Tzu Chi Medical FoundationNational Science and Technology Council, Taiwan NSTC 113-2313-B-001-006-National Science and Technology Council, Taiwan NSTC 114-2314-B-303-006-National Science and Technology Council, Taiwan NSTC 114-2628-B-002-008-
6 · The paper itself

Abstract

Protoplast-based systems provide a powerful and versatile platform for exploring how plants sense and respond to their environment. By enabling the direct delivery of proteins, DNA, and RNA into plant cells after cell wall removal, this approach facilitates precise molecular dissection of signaling, stress adaptation, and gene regulation across both model species and economically important crops. In this review, we analyzed 1050 published articles and categorizing them by delivery methods, research focus, plant species, and tissue types. We further highlight recent advances, including the application of single-cell transcriptomics, which provides unprecedented resolution for dissecting cellular responses and offers deeper insights into the mechanisms underlying stress resilience. Importantly, protoplast regeneration is gaining renewed attention not only as a model system for studying cellular reprogramming but also as a practical platform for crop improvement. Applications of protoplast regeneration include protoplast fusion, which integrates nuclear and organellar DNA/genomes from divergent parents to accelerate breeding and enhance tolerance to both biotic and abiotic stresses. Another important application is CRISPR/Cas ribonucleoprotein (RNP)-based editing targeting stress-resilience-related genes. In asexually propagated or highly heterozygous perennial crops with limited sexual reproduction, protoplast-based RNP delivery offers a viable and regulation-compliant strategy. This approach may help address public concerns over transgenic technologies while enabling the rapid development of stress-tolerant cultivars.

Indexed as

Gene EditingGenome, PlantGenomicsProtoplastsCRISPR-Cas SystemsSingle-Cell Gene Expression AnalysisCRISPRregenerationsingle‐cell transcriptometransgene‐free gene editing

Identifiers

PMID41521468
PMCPMC12976588

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.