Evidence map›Paper›PMID 41520304›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2026

Exploring standing genetic variation for barley leaf rust resistance in Australian breeding panel.

Madhav Pandit, Peter Dracatos, Sambasivam Periyannan, Yasmine Lam, Stephanie M Brunner, Takaaki Honse, Jingyang Tong, Eric Dinglasan, Dini Ganesalingam, David Moody and 4 more

Abstract read
In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Madhav PanditCentre for Crop Science, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland (UQ), Brisbane, QLD, Australia.ORCID https://orcid.org/0000-0002-0148-1569
Peter DracatosDepartment of Ecological, Plant and Animal Sciences, School of Agriculture, Biomedicine and Environment (SABE), La Trobe Institute for Sustainable Agriculture and Food (LISAF), Bundoora, VIC, Australia.
Sambasivam PeriyannanCentre for Crop Science, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland (UQ), Brisbane, QLD, Australia.
Yasmine LamCentre for Crop Science, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland (UQ), Brisbane, QLD, Australia.
Stephanie M BrunnerCentre for Crop Science, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland (UQ), Brisbane, QLD, Australia.
Takaaki HonseCentre for Crop Science, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland (UQ), Brisbane, QLD, Australia.
Jingyang TongCentre for Crop Science, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland (UQ), Brisbane, QLD, Australia.
Eric DinglasanCentre for Crop Science, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland (UQ), Brisbane, QLD, Australia.
Dini GanesalingamInterGrain Pty Ltd, Perth, WA, Australia.
David MoodyInterGrain Pty Ltd, Perth, WA, Australia.
Silvina BaraibarInterGrain Pty Ltd, Perth, WA, Australia.
Lee HickeyCentre for Crop Science, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland (UQ), Brisbane, QLD, Australia.
Samir AlahmadCentre for Crop Science, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland (UQ), Brisbane, QLD, Australia. s.alahmad@uq.edu.au.
Hannah RobinsonCentre for Crop Science, Queensland Alliance for Agriculture and Food Innovation (QAAFI), The University of Queensland (UQ), Brisbane, QLD, Australia. h.robinson1@uq.edu.au.ORCID http://orcid.org/0000-0002-8303-8076

Funding

Grains Research and Development Corporation UOQ2401-011RSX
6 · The paper itself

Abstract

key messageA genotype-by-environment interaction analysis and haplotype mapping approach identifies novel haplo-blocks that can be combined with Rph20 for enhanced resistance against barley leaf rust. Barley (Hordeum vulgare L.) production worldwide is threatened by different rust diseases, particularly barley leaf rust (BLR) caused by fungus Puccinia hordei. Yet, very limited works have explored BLR resistance mechanism across multiple environments. This study explored genotype-by-environment interactions (GEI) in a BLR disease screening dataset collected over multiple years using a multi-environment trial (MET) analysis followed by iClass method. A haplotype-based approach, using local genomic estimated breeding values (LGEBVs), identified five environmentally stable genomic regions (haplo-blocks: 2HS-b000305, 5HS-b001038, 5HS-b001039, 5HS-b001040 and 5HL-b001125) associated with BLR resistance at adult plant stage. While haplo-block co-locating popular adult plant resistance (APR) gene Rph20 was validated as a key genomic region to drive stability in resistance across multiple environments, other haplo-blocks with high-effect haplotypes were also reported as prospective novel sources of stability. Notably, environmentally specific haplo-blocks offered insights into GEI-driven resistance mechanisms. The study also highlighted the potential of haplo-block stacking to improve adult plant resistance as genotypes with multiple favorable haplotypes demonstrated a linear relationship with enhanced BLR resistance. These findings hold practical implications for barley breeders, paving the way for more resilient cultivars and advancing breeding methodologies for complex traits like disease resistance.

Indexed as

Disease ResistanceGenetic VariationHordeumPlant BreedingPlant DiseasesAustraliaBasidiomycotaChromosome MappingGene-Environment InteractionGenotypeHaplotypesPhenotypePolymorphism, Single NucleotidePucciniaQuantitative Trait Loci

Identifiers

PMID41520304
PMCPMC12791067

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.