Evidence map›Paper›PMID 41518824›Full record

ArticleInternational journal of medical informatics2026

A topic modeling analysis of stigma dimensions, social, and related behavioral circumstances in clinical notes among patients with HIV.

Ziyi Chen, Yiyang Liu, Mattia Prosperi, Krishna Vaddiparti, Robert L Cook, Jiang Bian, Yi Guo, Yonghui Wu

Abstract read
In one paragraph

Article in International journal of medical informatics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Identify Patients at Risk of HIV Using a Clinical Large Language Model from Electronic Health Records.Proceedings. IEEE International Conference on Healthcare Informatics · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ziyi ChenDepartment of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA.
Yiyang LiuDepartment of Epidemiology, College of Public Health and Health Professions, College of Medicine, University of Florida, Gainesville, FL, USA.
Mattia ProsperiDepartment of Epidemiology, College of Public Health and Health Professions, College of Medicine, University of Florida, Gainesville, FL, USA.
Krishna VaddipartiDepartment of Epidemiology, College of Public Health and Health Professions, College of Medicine, University of Florida, Gainesville, FL, USA.
Robert L CookDepartment of Epidemiology, College of Public Health and Health Professions, College of Medicine, University of Florida, Gainesville, FL, USA.
Jiang BianDepartment of Biostatistics and Health Data Science, School of Medicine, Indiana University, Indianapolis, IN, USA; Regenstrief Institute, Indianapolis, IN, USA.
Yi GuoDepartment of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA.
Yonghui WuDepartment of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA; Preston A. Wells, Jr. Center for Brain Tumor Therapy, Lillian S. Wells Department of Neurosurgery, University of Florida, Gainesville, FL, USA. Electronic address: yonghui.wu@ufl.edu.

Funding

ReCARDO: Using Real-World Data to Derive Common Data Elements for Alzheimer's Disease and AD-Related Dementias Research Through Ontological InnovationU24AG098157 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Zoe Arvanitakis, Yong Chen · 2025 to 2026
$9.8M
Developing and Evaluating a Machine-Learning Opioid Prediction & Risk-Stratification E-Platform (DEMONSTRATE)R01DA050676 · NIDA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LO-CIGANIC, WEI-HSUAN JENNY · 2021 to 2025
$3.2M
Artificial Intelligence and Counterfactually Actionable Responses to End HIV (AI-CARE-HIV)R01AI172875 · NIAID · UNIVERSITY OF FLORIDA · PI Jiang Bian, Mattia Prosperi · 2023 to 2026
$2.8M
Social determinants of health for predicting risks of HCV infection and HCV/HIV co-infectionR01DA057886 · NIDA · UNIVERSITY OF FLORIDA · PI Haesuk Park · 2023 to 2026
$2.7M
Identifying pediatric asthma subtypes using novel privacy-preserving federated machine learning methodsR01HL169277 · NHLBI · UNIVERSITY OF FLORIDA · PI Jennifer Noel Fishe, Jie Xu · 2023 to 2026
$2.7M
De-implementation of inappropriate thyroid ultrasoundR37CA272473 · NCI · MAYO CLINIC ROCHESTER · PI Juan P Brito Campana · 2022 to 2026
$2.6M
Advancing Drug Repositioning for Alzheimer’s Disease using Real-world DataR56AG069880 · NIA · UNIVERSITY OF FLORIDA · PI BIAN, JIANG, CHEN, YONG · 2021 to 2022
$1.6M
AI-based Clinical decision support to idenTify wOmeN for HIV testing and PrEP in Florida (ACTION-HIV)R34MH135768 · NIMH · UNIVERSITY OF FLORIDA · PI CHO, HWAYOUNG, LIU, YIYANG · 2024 to 2024
$684k
NCI NIH HHS R37 CA272473NHLBI NIH HHS R01 HL169277NIAID NIH HHS R01 AI172875NIA NIH HHS R56 AG069880NIA NIH HHS U24 AG098157NIDA NIH HHS R01 DA050676NIDA NIH HHS R01 DA057886NIMH NIH HHS R34 MH135768
6 · The paper itself

Abstract

objectiveTo characterize stigma dimensions, social, and related behavioral circumstances in people living with HIV (PLWHs) seeking care, using natural language processing methods applied to a large collection of electronic health record (EHR) clinical notes from a large integrated health system in the southeast United States.

methodsWe identified a cohort of PLWHs from the University of Florida (UF) Health Integrated Data Repository and performed topic modeling analysis using Latent Dirichlet Allocation (LDA) to uncover stigma-related dimensions and related social and behavioral contexts. Domain experts created a seed list of HIV-related stigma keywords, then applied a snowball strategy to iteratively review notes for additional terms until saturation was reached. To identify more target topics, we tested three keyword-based filtering strategies. The detected topics were evaluated using three widely used metrics and manually reviewed by specialists. Word frequency analysis was used to highlight the prevalent terms associated with each topic. In addition, we conducted topic variation analysis among subgroups to examine differences across age- and sex-specific demographics.

resultsWe identified 9,140 PLWHs at UF Health and collected 2.9 million clinical notes. Through the iterative keyword approach, we generated a list of 91 keywords associated with HIV-related stigma. Topic modeling on sentences containing at least one keyword uncovered a wide range of topic themes associated with HIV-related stigma, social, and related behaviors circumstances, including "Mental Health Concern and Stigma", "Social Support and Engagement", "Limited Healthcare Access and Severe Illness", "Missed Appointments and HIV Care Monitoring", "Treatment Refusal and Isolation", "Intimate Partner Violence and Relationship Concerns", "Fear of Falling and Physical Health Concerns", "Substance Abuse", and "Food Insecurity and Resource Scarcity". Topic variation analysis across sex and age subgroups revealed no substantial difference between males and females; however, there were differences were observed among different ages. For example, "Fear of Falling and Physical Health Concerns" was notably more prevalent among older adults.

conclusionExtracting and understanding the HIV-related stigma and associated social and behavioral circumstances from EHR clinical notes enables scalable, time-efficient assessment and overcoming the limitations of traditional questionnaires. Findings from this research provide actionable insights to inform patient care and interventions to improve HIV-care outcomes.

Indexed as

Electronic Health RecordsHIV InfectionsSocial StigmaAdultFemaleHumansMaleMiddle AgedNatural Language ProcessingClinical NotesElectronic Health RecordsHuman Immunodeficiency Virus, StigmaNatural Language ProcessingTopic Modeling

Identifiers

PMID41518824
PMCPMC13177315

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.