Evidence map›Paper›PMID 41515304›Full record

ArticleMolecules (Basel, Switzerland)2025

Segmentation and Multimodal Characterization of Metal Particles in the Human Hippocampus Using Discrete Segmentation Algorithms and Correlation Spectral Analysis.

Ján Pánik, Mária Ždímalová, Daniel Kosnáč, Martin Kopáni, Silvia Dulanská, Nazarii Kretsul, Michal Trnka

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ján PánikInstitute of Medical Physics and Biophysics, Faculty of Medicine, Comenius University, Sasinkova 2, 813 72 Bratislava, Slovakia.ORCID 0000-0001-9976-2256
Mária ŽdímalováDepartment of Mathematics and Descriptive Geometry, Faculty of Civil Engineering, Slovak Technical University, Radlinského 11, 811 05 Bratislava, Slovakia.ORCID 0000-0003-4541-6811
Daniel KosnáčInstitute of Medical Physics and Biophysics, Faculty of Medicine, Comenius University, Sasinkova 2, 813 72 Bratislava, Slovakia.ORCID 0000-0002-5085-2792
Martin KopániInstitute of Medical Physics and Biophysics, Faculty of Medicine, Comenius University, Sasinkova 2, 813 72 Bratislava, Slovakia.
Silvia DulanskáInstitute of Medical Physics and Biophysics, Faculty of Medicine, Comenius University, Sasinkova 2, 813 72 Bratislava, Slovakia.ORCID 0000-0003-3324-0388
Nazarii KretsulDepartment of Mathematics and Descriptive Geometry, Faculty of Civil Engineering, Slovak Technical University, Radlinského 11, 811 05 Bratislava, Slovakia.ORCID 0009-0006-6233-4737
Michal TrnkaInstitute of Medical Physics and Biophysics, Faculty of Medicine, Comenius University, Sasinkova 2, 813 72 Bratislava, Slovakia.ORCID 0000-0003-4599-1971

Funding

Slovak Scientific Grant Agency Vega 1/0036/23
6 · The paper itself

Abstract

The accumulation of metallic micro- and nanoparticles in the human hippocampus is increasingly linked to neurotoxic processes and neurodegenerative disorders. Precise segmentation and detailed characterization of these particles are crucial to understanding their role. This study presents a novel method that combines discrete segmentation based on graph-cut theory with Dinic's algorithm for the computation of maximum flow. The images are modeled as directed weighted graphs, with pixel intensities and gradients defining edge capacities, enabling robust segmentation in electron microscopy data. To ensure robustness, the method is validated against ground-truth masks, achieving a Dice coefficient of 0.97898 ± 0.0172 and an Intersection over Union (IoU) of 0.9609 ± 0.0326. Morphometric parameters-area, perimeter, circularity, and Feret diameters-are automatically extracted. Concurrently, elemental analysis using Energy-Dispersive X-ray Spectroscopy (EDS) reveals a heterogeneous composition, including iron-rich particles and compounds containing nickel and chromium. The observed variability highlights the importance of single-particle analysis in better understanding the neurobiological impact of metallic deposits.

Indexed as

AlgorithmsHippocampusImage Processing, Computer-AssistedMetal NanoparticlesMetalsHumansSpectrometry, X-Ray EmissionMetalsbiomedical imaginghuman hippocampusmaximum flowmetallic particlesspectral analysis

Identifiers

PMID41515304
PMCPMC12786407

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.