Evidence map›Paper›PMID 41515073›Full record

ArticlePlants (Basel, Switzerland)2026

Genomic Variation and GWAS Analysis for Salt Tolerance Discovered in Egyptian Rice Germplasm.

Yueying Wang, Faming Yu, Sirinthorn Kongpraphrut, Congcong Liu, Muhammad Asad Ullah Asad, Salma Kelany, Mengrui Sun, Yuxuan Wang, Yang Lv, Galal Anis and 4 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Plants (Basel, Switzerland), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Recent Advances in Plant Genetics and Genomics.Plants (Basel, Switzerland) · 2026
    Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Yueying WangState Key Laboratory of Rice Biology and Breeding, China National Rice Research Institute, Hangzhou 310006, China.ORCID 0009-0001-7519-3471
Faming YuInstitute of Crop and Nuclear Technology Utilization, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China.
Sirinthorn KongpraphrutState Key Laboratory of Rice Biology and Breeding, China National Rice Research Institute, Hangzhou 310006, China.
Congcong LiuState Key Laboratory of Rice Biology and Breeding, China National Rice Research Institute, Hangzhou 310006, China.ORCID 0009-0006-8342-4213
Muhammad Asad Ullah AsadInstitute of Crop and Nuclear Technology Utilization, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China.
Salma KelanyState Key Laboratory of Rice Biology and Breeding, China National Rice Research Institute, Hangzhou 310006, China.
Mengrui SunState Key Laboratory of Rice Biology and Breeding, China National Rice Research Institute, Hangzhou 310006, China.
Yuxuan WangState Key Laboratory of Rice Biology and Breeding, China National Rice Research Institute, Hangzhou 310006, China.
Yang LvInstitute of Crop and Nuclear Technology Utilization, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China.
Galal AnisRice Research and Training Centre, Field Crops Research Institute, Agriculture Research Center, Kafrelsheikh 33717, Egypt.
Mohamed HazmanAgricultural Genetic Engineering Research Institute, Agricultural Research Center, Giza 12619, Egypt.ORCID 0000-0002-7797-6015
Qian QianState Key Laboratory of Rice Biology and Breeding, China National Rice Research Institute, Hangzhou 310006, China.
Yuexing WangState Key Laboratory of Rice Biology and Breeding, China National Rice Research Institute, Hangzhou 310006, China.
Longbiao GuoState Key Laboratory of Rice Biology and Breeding, China National Rice Research Institute, Hangzhou 310006, China.ORCID 0000-0003-1016-049X

Funding

China Postdoctoral Science Foundation 2024M763601Major Science and Technology project of Zhejiang Province 2021C02063-4National Natural Science Foundation of China W2433049Natural Science Foundation of Jiangxi Province funding project 20242BAB20284Zhejiang Natural Science Foundation project LQN25C130002
6 · The paper itself

Abstract

Egyptian rice landraces represent a unique genetic reservoir shaped by arid environments, yet their genomic and transcriptional response to salt stress remains largely unexplored. Here, we integrated genomic, transcriptomic, and population genetic analyses to systematically unravel the mechanisms of salt tolerance in this vital germplasm. Resequencing 56 Egyptian accessions uncovered a treasure trove of genetic variation, including 18,204 novel SNPs. An expanded GWAS on 258 accessions discovered 17 novel loci for salt tolerance. Parallel RNA-Seq analysis of a salt-tolerant-susceptible pair (Giza 176 vs. 9311) under stress delineated a defense network centered on phenylpropanoid and lipid metabolic pathways in the tolerant genotype. The power of our integrated approach was exemplified by the convergent identification of

Indexed as

Egyptian ricegenomic divergenceGWAShaplotypesalt tolerance

Identifiers

PMID41515073
PMCPMC12787332

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.