Evidence map›Paper›PMID 41513851›Full record

ArticleNature chemical biology2026

Molecular insight into 5' RNA capping with Np

Valentina M Serianni, Jana Škerlová, Anna Knopp Dubánková, Anton Škríba, Hana Šváchová, Tereza Vučková, Anatolij Filimoněnko, Milan Fábry, Pavlína Řezáčová, Tomáš Kouba and 1 more

Abstract read
In one paragraph

Article in Nature chemical biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Detection and sequencing of ApProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Valentina M Serianni *Institute of Organic Chemistry and Biochemistry of the CAS, Flemingovo náměstí 2, Prague, Czechia.ORCID http://orcid.org/0009-0002-7145-4790
Jana Škerlová *Institute of Organic Chemistry and Biochemistry of the CAS, Flemingovo náměstí 2, Prague, Czechia.ORCID http://orcid.org/0000-0002-9579-4047
Anna Knopp DubánkováInstitute of Organic Chemistry and Biochemistry of the CAS, Flemingovo náměstí 2, Prague, Czechia.
Anton ŠkríbaInstitute of Organic Chemistry and Biochemistry of the CAS, Flemingovo náměstí 2, Prague, Czechia.ORCID http://orcid.org/0000-0003-1122-1098
Hana ŠváchováInstitute of Organic Chemistry and Biochemistry of the CAS, Flemingovo náměstí 2, Prague, Czechia.ORCID http://orcid.org/0009-0007-9352-4426
Tereza VučkováInstitute of Organic Chemistry and Biochemistry of the CAS, Flemingovo náměstí 2, Prague, Czechia.ORCID http://orcid.org/0009-0009-4947-0103
Anatolij FilimoněnkoInstitute of Organic Chemistry and Biochemistry of the CAS, Flemingovo náměstí 2, Prague, Czechia.
Milan FábryInstitute of Organic Chemistry and Biochemistry of the CAS, Flemingovo náměstí 2, Prague, Czechia.ORCID http://orcid.org/0000-0001-7857-4213
Pavlína ŘezáčováInstitute of Organic Chemistry and Biochemistry of the CAS, Flemingovo náměstí 2, Prague, Czechia.ORCID http://orcid.org/0000-0001-9626-346X
Tomáš KoubaInstitute of Organic Chemistry and Biochemistry of the CAS, Flemingovo náměstí 2, Prague, Czechia. tomas.kouba@uochb.cas.cz.ORCID http://orcid.org/0000-0001-8173-6930
Hana CahovaInstitute of Organic Chemistry and Biochemistry of the CAS, Flemingovo náměstí 2, Prague, Czechia. hana.cahova@uochb.cas.cz.

Funding

EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 101041374Ministerstvo Školství, Mládeže a Tělovýchovy (Ministry of Education, Youth and Sports) CZ.02.01.01/00/22_008/0004575
6 · The paper itself

Abstract

RNA capped with dinucleoside polyphosphates has been discovered in bacteria and eukaryotes only recently. The likely mechanism of this specific capping involves direct incorporation of dinucleoside polyphosphates by RNA polymerase as noncanonical initiating nucleotides. However, how these compounds bind into the active site of RNA polymerase during transcription initiation is unknown. Here, we explored transcription initiation in vitro, using a series of DNA templates in combination with dinucleoside polyphosphates and model RNA polymerase from Thermus thermophilus. We observed that the transcription start site can vary on the basis of the compatibility of the specific template and dinucleoside polyphosphate. Cryo-electron microscopy structures of transcription initiation complexes with dinucleoside polyphosphates revealed that both nucleobase moieties can pair with the DNA template. The first encoded nucleotide pairs in a canonical Watson-Crick manner, whereas the second nucleobase pairs noncanonically in a reverse Watson-Crick manner. Our work provides a structural explanation of how dinucleoside polyphosphates initiate RNA transcription.

Indexed as

Dinucleoside PhosphatesDNA-Directed RNA PolymerasesRNA, BacterialRNA CapsThermus thermophilusCryoelectron MicroscopyModels, MolecularTranscription, GeneticTranscription Initiation SiteDinucleoside PhosphatesDNA-Directed RNA PolymerasesRNA, BacterialRNA Caps

Identifiers

PMID41513851
PMCPMC13226041

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.