Evidence map›Paper›PMID 41513691›Full record

ArticleNature communications2026

A SET domain-containing protein and HCF-1 maintain transgenerational epigenetic memory.

Chenming Zeng, Giulia Furlan, Miguel Vasconcelos Almeida, Juan C Rueda-Silva, Jonathan Price, Helena Santos-Rosa, Jingxiu Xu, Yan Kuang, Enric Cata Socias, Jonas Mars and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Intraspecific variation in the duration of epigenetic inheritance.bioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Chenming Zeng *Department of Biochemistry, University of Cambridge, Cambridge, CB2, United Kingdom.
Giulia Furlan *The Gurdon Institute, University of Cambridge, Cambridge, CB2, United Kingdom.
Miguel Vasconcelos Almeida *Department of Biochemistry, University of Cambridge, Cambridge, CB2, United Kingdom.ORCID http://orcid.org/0000-0002-4816-3111
Juan C Rueda-SilvaDepartment of Biochemistry, University of Cambridge, Cambridge, CB2, United Kingdom.ORCID http://orcid.org/0000-0003-1447-6184
Jonathan PriceDepartment of Biochemistry, University of Cambridge, Cambridge, CB2, United Kingdom.
Helena Santos-RosaDepartment of Biochemistry, University of Cambridge, Cambridge, CB2, United Kingdom.
Jingxiu XuDepartment of Biochemistry, University of Cambridge, Cambridge, CB2, United Kingdom.
Yan KuangSchool of Life Science, University of Science and Technology of China, Hefei, Anhui, China.
Enric Cata SociasDepartment of Biochemistry, University of Cambridge, Cambridge, CB2, United Kingdom.
Jonas MarsThe Gurdon Institute, University of Cambridge, Cambridge, CB2, United Kingdom.ORCID http://orcid.org/0000-0002-5904-2235
Pedro Rebelo-GuiomarDepartment of Biochemistry, University of Cambridge, Cambridge, CB2, United Kingdom.ORCID http://orcid.org/0000-0002-5060-7519
Meng HuangSchool of Life Science, University of Science and Technology of China, Hefei, Anhui, China.
Shouhong GuangSchool of Life Science, University of Science and Technology of China, Hefei, Anhui, China.ORCID http://orcid.org/0000-0001-7700-9634
Falk ButterInstitute of Molecular Biology, Mainz, Germany.ORCID http://orcid.org/0000-0002-7197-7279
Eric A MiskaDepartment of Biochemistry, University of Cambridge, Cambridge, CB2, United Kingdom. eam29@cam.ac.uk.ORCID http://orcid.org/0000-0002-4450-576X

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Cancer Research UK (CRUK) C13474/A27826NIH HHS P40 OD010440Wellcome TrustWellcome Trust (Wellcome) 219475/Z/19/Z
6 · The paper itself

Abstract

Transgenerational epigenetic inheritance (TEI) allows epigenetic information to pass across generations through mechanisms such as small RNAs and histone modifications. Histone methylation is often deposited by SET domain-containing methyltransferases. Some SET proteins lack catalytic activity but still regulate chromatin and gene expression. Here, we characterize SET-24, a catalytically inactive SET domain protein that localizes to germline nuclei and is essential for germline immortality in Caenorhabditis elegans. In set-24 mutants, small RNA-mediated epigenetic silencing is impaired. Proteomic, yeast two-hybrid, and pull-down assays show that SET-24 interacts with HCF-1, a chromatin factor linked to complexes like COMPASS, which deposits H3K4me3. Loss of SET-24 leads to increased H3K4me3 at transcription start sites of hundreds of genes. Although transcription remains largely unchanged, small RNA production is disrupted for about 30% of these genes. We propose that SET-24 preserves germline epigenetic memory by sustaining a chromatin environment that supports small RNA biogenesis across generations.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsEpigenesis, GeneticAnimalsChromatinEpigenetic MemoryGerm CellsHistonesMutationCaenorhabditis elegans ProteinsChromatinHistones

Identifiers

PMID41513691
PMCPMC12886896

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.