Evidence map›Paper›PMID 41513689›Full record

ArticleNPJ biofilms and microbiomes2026

High-resolution visualization of biofilm matrix development in space and time using fluorescent stains for cellulose.

Zaira Heredia-Ponce, Aurélien Bailly, Leo Eberl

Abstract read
In one paragraph

Article in NPJ biofilms and microbiomes, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Zaira Heredia-PonceDepartment of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland.
Aurélien BaillyDepartment of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland. aurelien.bailly@botinst.uzh.ch.
Leo EberlDepartment of Plant and Microbial Biology, University of Zurich, Zurich, Switzerland. leberl@botinst.uzh.ch.

Funding

Swiss National Science Foundation 310030_192800
6 · The paper itself

Abstract

The establishment of microbial biofilms, communities embedded in self-produced extracellular matrices, poses growing challenges for health and antimicrobial management. Understanding biofilm formation is crucial for developing control and eradication strategies. In response to environmental cues, planktonic bacteria adopt a sessile lifestyle, coordinating growth with matrix production. We monitored cellulose biofilm formation by Pseudomonas sp. IsoF in real time using single-step fluorescent stains. Live-tracking of polysaccharide synthesis revealed dynamic matrix arrangements shaping final biofilm structure. Cellulose determined substratum adherence, cell contacts, and colony patterning in IsoF. Biofilms formed in flow-cells and at air-liquid interfaces were remarkably similar in composition, progression, and architecture. Artificial elevation of intracellular c-di-GMP levels produced cellulose-dependent biofilms distinct from the wild type and induced a secondary exopolysaccharide. Our fluorescent probes provide real-time visualization of matrix development, enabling detailed analysis of biofilm architecture and regulation in standard laboratory conditions.

Indexed as

BiofilmsCelluloseFluorescent DyesPseudomonasStaining and LabelingCyclic GMPPolysaccharides, Bacterialbis(3',5')-cyclic diguanylic acidCelluloseCyclic GMPFluorescent DyesPolysaccharides, Bacterial

Identifiers

PMID41513689
PMCPMC12847807

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.