Evidence map›Paper›PMID 41512021›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2026

Nonsense-mediated decay controls a negative feedback loop in innate immune sensing.

Simon Boudreault, Yahira Rivera-Lopez, Max B Ferretti, Matthew A Tracey, James Bonner, Bertram L Jacobs, Kristen W Lynch

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Simon BoudreaultDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0002-0517-9092
Yahira Rivera-LopezDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0003-1384-1506
Max B FerrettiDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0003-2961-6362
Matthew A TraceyDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0001-9694-6914
James BonnerArizona State University-Banner Center for Neurodegenerative Diseases and School of Life Sciences, Arizona State University, Tempe, FL 85287.
Bertram L JacobsArizona State University-Banner Center for Neurodegenerative Diseases and School of Life Sciences, Arizona State University, Tempe, FL 85287.ORCID 0000-0002-9529-8107
Kristen W LynchDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0002-0120-8079

Funding

Signal-Induced Regulation of Alternative RNA ProcessingR35GM118048 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI KRISTEN W LYNCH · 2016 to 2026
$6.6M
Canadian Institutes of Health Research (CIHR) BPF186576Canadian Institutes of Health Research (CIHR) MFE201033Fonds de recherche du Québec (FRQ) 324754HHS | NIH | National Institute of General Medical Sciences (NIGMS) GM118048NIGMS NIH HHS R35 GM118048
6 · The paper itself

Abstract

Nonsense-mediated decay (NMD) is an mRNA decay pathway which degrades potential harmful transcripts that contain premature termination codons. However, NMD's importance also extends to the control of isoform abundance under physiological conditions. During viral infection, NMD is inhibited through numerous mechanisms; however, NMD has been shown to have both antiviral as well as proviral activities, raising further questions into the role and control of NMD during viral infection. These observations have led us to investigate the potential involvement of NMD in dsRNA sensing as a mechanism that might explain these discrepancies. Using EIF4A2 exon 10B inclusion as an example of AS-NMD isoform accumulating during viral infection, we show that dsRNA sensing inhibits NMD. This effect is correlated with translational blockade and is driven primarily by RNaseL activation, and by PKR in the absence of RNaseL activation. Surprisingly, NMD inhibition limits the induction of IFN-β as well as interferon-stimulated genes, and this effect is upstream of IRF3 phosphorylation and translocation to the nucleus. NMD inhibition also decreases PKR and RNaseL activation as well as PIC-mediated cell death by decreasing the dsRNA content, suggesting NMD directly controls dsRNA sensing by controlling the dsRNA load. Therefore, inhibition of NMD upon dsRNA sensing provides a negative feedback loop that contributes to shaping the innate immune sensing pathways.

Indexed as

Feedback, PhysiologicalImmunity, InnateNonsense Mediated mRNA DecayAnimalseIF-2 KinaseEukaryotic Initiation Factor-4AHumansInnate Immunity RecognitionInterferon-betaInterferon Regulatory Factor-3PhosphorylationRNA, Double-StrandedeIF-2 KinaseEukaryotic Initiation Factor-4AInterferon-betaInterferon Regulatory Factor-3RNA, Double-StrandeddsRNA sensingnonsense-mediated decayRNaseL

Identifiers

PMID41512021
PMCPMC12799163

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.