Evidence map›Paper›PMID 41511464›Full record

ArticleBriefings in bioinformatics2026

Identification of cancer mini-drivers by deciphering selective landscape in the cancer genome.

Xunuo Zhu, Wenyi Zhao, Siqi Wang, Jingwen Yang, Jingqi Zhou, Binbin Zhou, Ji Cao, Bo Yang, Zhan Zhou, Xun Gu

Abstract read
In one paragraph

Article in Briefings in bioinformatics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. An Integrative Variant Scoring Function for Finding Novel Genes Associated with Ovarian and Thyroid Cancer.International journal of environmental research and public health · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Xunuo ZhuState Key Laboratory of Advanced Drug Delivery and Release Systems & Zhejiang Provincial Key Laboratory of Anti-Cancer Drug Research, College of Pharmaceutical Sciences, Zhejiang University, 866 Yuhangtang Rd, Xihu District, Hangzhou, Zhejiang 310058, P.R. China.
Wenyi ZhaoState Key Laboratory of Advanced Drug Delivery and Release Systems & Zhejiang Provincial Key Laboratory of Anti-Cancer Drug Research, College of Pharmaceutical Sciences, Zhejiang University, 866 Yuhangtang Rd, Xihu District, Hangzhou, Zhejiang 310058, P.R. China.ORCID 0000-0003-1834-0348
Siqi WangState Key Laboratory of Advanced Drug Delivery and Release Systems & Zhejiang Provincial Key Laboratory of Anti-Cancer Drug Research, College of Pharmaceutical Sciences, Zhejiang University, 866 Yuhangtang Rd, Xihu District, Hangzhou, Zhejiang 310058, P.R. China.
Jingwen YangSchool of Medicine, Indiana University, 340 West 10th Street, Indianapolis, IN 46202, USA.
Jingqi ZhouSchool of Public Health, Shanghai Jiao Tong University School of Medicine, 227 South Chongqing Rd, Huangpu District, Shanghai 200025, P.R. China.
Binbin ZhouSchool of Computer and Computing Science, Hangzhou City University, 51 Huzhou St, Gongshu District, Hangzhou, Zhejiang 310015, P.R. China.
Ji CaoState Key Laboratory of Advanced Drug Delivery and Release Systems & Zhejiang Provincial Key Laboratory of Anti-Cancer Drug Research, College of Pharmaceutical Sciences, Zhejiang University, 866 Yuhangtang Rd, Xihu District, Hangzhou, Zhejiang 310058, P.R. China.ORCID 0000-0003-2813-6404
Bo YangState Key Laboratory of Advanced Drug Delivery and Release Systems & Zhejiang Provincial Key Laboratory of Anti-Cancer Drug Research, College of Pharmaceutical Sciences, Zhejiang University, 866 Yuhangtang Rd, Xihu District, Hangzhou, Zhejiang 310058, P.R. China.
Zhan ZhouState Key Laboratory of Advanced Drug Delivery and Release Systems & Zhejiang Provincial Key Laboratory of Anti-Cancer Drug Research, College of Pharmaceutical Sciences, Zhejiang University, 866 Yuhangtang Rd, Xihu District, Hangzhou, Zhejiang 310058, P.R. China.ORCID 0000-0002-2730-5483
Xun GuDepartment of Genetics, Development and Cell Biology, Iowa State University, 2437 Pammel Drive, Ames, IA 50011, USA.ORCID 0000-0001-9845-6986

Funding

Fundamental Research Funds for the Central Universities 226-2025-00065National Key Research and Developmental Program of China 2024YFA1306400National Natural Science Foundation of China 32370712National Natural Science Foundation of China 32500556S&T Program of Zhejiang 2024C03003S&T Program of Zhejiang 2025C02068Zhejiang Provincial Natural Science Foundation of China LQ24C060005
6 · The paper itself

Abstract

Cancer development is driven by somatic evolution and clonal selection. However, traditional selective pressure analysis methods have treated all sites within a gene equally, such a gene-level model oversimplifies the complexity of cancer evolution. In this study, we introduced CN/CS-calculator, a novel site-specific method that can capture selective pressures acting across different gene sites. By deciphering the interplay between the selection pattern and the function of a gene in oncogenesis, CN/CS-calculator uncovers a unique class of mini-driver genes, which exhibit weak positive selection, with certain critical sites providing context-dependent promoter effects on the fitness of cancer subclones while others are constrained by evolutionary conservation. Our method emphasizes the importance of site-specific analysis in uncovering how subtle evolutionary forces shape cancer biology. The refined understanding offers new insights into the mechanisms of cancer heterogeneity and molecular evolution, with potential implications for advancing therapeutic strategies and prognostic assessments.

Indexed as

Genome, HumanNeoplasmsEvolution, MolecularHumansMutationSelection, Geneticcancer evolutionCN/CS-calculatormini-driver genesselection pressuresomatic mutation

Identifiers

PMID41511464
PMCPMC12784965

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.