Evidence map›Paper›PMID 41509256›Full record

ArticlebioRxiv : the preprint server for biology2026

The control of prickle formation in

Brian St Aubin, Tom Poorten, Andrew Fister, Cherie Ochsenfeld, Joel Reiner, Allie Sandra Castillo, Rishi Aryal, Tomáš Brůna, Olga Dudchenko, Daniel James Sargent and 18 more

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors.

Brian St AubinPairwise, 807 E. Main St. Suite 4100, Durham, NC 27701, USA.
Tom PoortenPairwise, 807 E. Main St. Suite 4100, Durham, NC 27701, USA.
Andrew FisterPairwise, 807 E. Main St. Suite 4100, Durham, NC 27701, USA.
Cherie OchsenfeldPairwise, 807 E. Main St. Suite 4100, Durham, NC 27701, USA.
Joel ReinerPairwise, 807 E. Main St. Suite 4100, Durham, NC 27701, USA.
Allie Sandra CastilloPairwise, 807 E. Main St. Suite 4100, Durham, NC 27701, USA.
Rishi AryalNorth Carolina State University, Dept. of Horticultural Science, Raleigh, NC 27607, USA.
Tomáš BrůnaJoint Genome Institute, US Dept. of Energy, Lawrence Berkeley National Lab.ORCID 0000-0001-9811-5532
Olga DudchenkoThe Center for Genome Architecture, Department of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555, USA.
Daniel James SargentNIAB, 93 Lawrence Weaver Road, Cambridge CB3 0LE, UK.
Daniel MeadWellcome Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.
Matteo ButiDepartment of Agriculture, Food, Environment and Forestry (DAGRI), University of Florence, Florence, Italy.
Alexander SilvaUniversity of Arkansas, Department of Horticulture, Fayetteville, AR 72701, USA.
Melanie PhamThe Center for Genome Architecture, Department of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555, USA.
David WeiszThe Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Nahla BassilUSDA-ARS, National Clonal Germplasm Repository, Corvallis, OR 97333, USA.
Hudson AshrafiNorth Carolina State University, Dept. of Horticultural Science, Raleigh, NC 27607, USA.
Erez Lieberman AidenThe Center for Genome Architecture, Department of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555, USA.
Nat GrahamPairwise, 807 E. Main St. Suite 4100, Durham, NC 27701, USA.
Deepika ChauhanPairwise, 807 E. Main St. Suite 4100, Durham, NC 27701, USA.
Eric DeanPairwise, 807 E. Main St. Suite 4100, Durham, NC 27701, USA.
Warner LowryPairwise, 807 E. Main St. Suite 4100, Durham, NC 27701, USA.
Lauren RedpathPairwise, 807 E. Main St. Suite 4100, Durham, NC 27701, USA.
Pradeep MarriPairwise, 807 E. Main St. Suite 4100, Durham, NC 27701, USA.
Shai LawitPairwise, 807 E. Main St. Suite 4100, Durham, NC 27701, USA.
Gina PhamPairwise, 807 E. Main St. Suite 4100, Durham, NC 27701, USA.
Margaret WorthingtonUniversity of Arkansas, Department of Horticulture, Fayetteville, AR 72701, USA.
Brian Cw CrawfordPairwise, 807 E. Main St. Suite 4100, Durham, NC 27701, USA.ORCID 0009-0002-3904-5954

Funding

GENOME WIDE MAPPING OF LOOPS USING IN SITU HI-CUM1HG009375 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI LIEBERMAN-AIDEN, EREZ · 2017 to 2021
$4.7M
NHGRI NIH HHS UM1 HG009375Wellcome Trust
6 · The paper itself

Abstract

Prickles on blackberry and raspberry canes make pruning, harvesting, and handling more difficult and can increase labor costs for growers. The trait has been challenging to improve in these clonal crops because it is recessive and linked to undesirable agronomic traits. In blackberry and red raspberry, breeding programs have used recessive mutants at the

Identifiers

PMID41509256
PMCPMC12776125

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.