ArticleScientific data2026
High-quality haplotype-resolved genome assembly and annotation of Malus baccata 'Jackii'.
Article in Scientific data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.
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3 citing papers in PubMed.
- QTL analysis ofFrontiers in plant science · 2026Article
- Inheritance of Calyx Abscission in Apple: A Trait with Potential Impact on Fruit Rot Susceptibility.Plants (Basel, Switzerland) · 2025Article
- Genetic mapping, marker development, and identification of candidate genes for powdery mildew resistance inFrontiers in plant science · 2025Article
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9 authors.
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Abstract
Malus baccata 'Jackii' has been observed to exhibit multiple disease resistances, thus rendering it a promising source for breeding new disease-resistant apple cultivars. Here, we present the first haplotype-resolved genome assembly and annotation of this genotype, achieved by integrating PacBio HiFi sequencing, Hi-C, and mRNA sequencing data with a range of bioinformatic tools and databases. The genome assembly comprises 17 pseudochromosomes with total scaffold lengths of 654.6 Mb and 637.5 Mb for the two haplotypes, respectively. Both haplotypes have scaffold N50 values exceeding 30 Mb, with 42,441 and 46,507 predicted genes, of which 99.9% were successfully annotated. The high quality of this genome is supported by BUSCO analysis values exceeding 97.5% for both haplotypes. This comprehensive dataset is well suited for a wide range of future genomic analyses and is anticipated to benefit apple breeding, particularly in the context of enhancing disease resistance.
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