Evidence map›Paper›PMID 41506265›Full record

ArticleImmunity2026

State-specific enhancer landscapes govern microglial plasticity.

Nicole Hamagami, Dvita Kapadia, Kia M Barclay, Yanlong Huang, Nora Abduljawad, Zuolin Cheng, Liam McLaughlin, Darsh Singhania, Xukai Ding, Jin Yang and 8 more

Abstract read
In one paragraph

Article in Immunity, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Review
  3. Roles of Microglia in Cerebral Small Vessel Disease.CNS neuroscience & therapeutics · 2026
    Review
  4. Neuroinflammation in glaucoma: a myriad of cellular pathways and players.Mammalian genome : official journal of the International Mammalian Genome Society · 2026
    Review
  5. Review
  6. Article
  7. Review
  8. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors.

Nicole HamagamiDepartment of Neuroscience, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA; Medical Scientist Training Program, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Dvita KapadiaDepartment of Neuroscience, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA; Neuroscience Graduate Program, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Kia M BarclayDepartment of Neuroscience, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA; Neuroscience Graduate Program, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Yanlong HuangDepartment of Neuroscience, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Nora AbduljawadDepartment of Neuroscience, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA; Neuroscience Graduate Program, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA; Department of Pathology and Immunology, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Zuolin ChengBradley Department of Electrical and Computer Engineering, Virginia Polytechnic Institute and State University, Arlington, VA 22203, USA.
Liam McLaughlinDepartment of Neuroscience, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Darsh SinghaniaDepartment of Neuroscience, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Xukai DingDepartment of Neuroscience, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA; Neuroscience Graduate Program, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Jin YangDepartment of Neuroscience, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Zhixin SunDepartment of Neuroscience, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Vikram KarraDepartment of Neuroscience, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Siling DuDepartment of Pathology and Immunology, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Peter BayguinovDepartment of Neuroscience, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Guoqiang YuDepartment of Automation, Tsinghua University, Beijing 100084, China; IDG/McGovern Institute for Brain Research, Tsinghua University, Beijing 100084, China.
Yang E LiDepartment of Neurosurgery, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA; Department of Genetics, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA.
Harrison W GabelDepartment of Neuroscience, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA. Electronic address: gabelh@wustl.edu.
Qingyun LiDepartment of Neuroscience, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA; Department of Genetics, Washington University in St. Louis School of Medicine, St. Louis, MO 63110, USA. Electronic address: qingyunli@wustl.edu.

Funding

Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI TIMOTHY J. EBERLEIN · 2001 to 2026
$128.0M
WU INSTITUTE OF CLINICAL AND TRANSLATIONAL SCIENCESUL1TR002345 · NCATS · WASHINGTON UNIVERSITY · PI William G. Powderly · 2017 to 2026
$97.8M
Novel Genetically Encoded Indicators for Interrogating Neuron-Astrocyte Communication Across TimescalesU19NS123719 · NINDS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI TIAN, LIN · 2021 to 2025
$10.7M
SIGNAL TRANSDUCTION PATHWAYS REGULATING NEURON SURVIVALR01NS041021 · NINDS · WASHINGTON UNIVERSITY · PI GABEL, HARRISON W · 2001 to 2023
$7.7M
MECHANISMS OF EPIGENETIC REGULATION IN NERVOUS SYSTEM DEVELOPMENTR01MH117405 · NIMH · WASHINGTON UNIVERSITY · PI Harrison W Gabel · 2019 to 2026
$3.9M
Neuroscience Training Program at Washington UniversityT32NS121881 · NINDS · WASHINGTON UNIVERSITY · PI Martha W Bagnall, Daniel Kerschensteiner · 2021 to 2026
$3.1M
Dissecting the origin, regulation and function of microglial subsets in Alzheimer's diseaseR01AG078512 · NIA · WASHINGTON UNIVERSITY · PI Qingyun Li · 2023 to 2026
$2.2M
The role of H3K36 methyltransferases on non-CpG methylation patterning in the mammalian brainF30HD110156 · NICHD · WASHINGTON UNIVERSITY · PI HAMAGAMI-SAMSON, NICOLE · 2022 to 2025
$164k
Examining Microglia Reactivation in Multiple SclerosisF31NS139508 · NINDS · WASHINGTON UNIVERSITY · PI BARCLAY, KIA · 2024 to 2025
$70k
NCATS NIH HHS UL1 TR002345NCI NIH HHS P30 CA091842NIA NIH HHS R01 AG078512NICHD NIH HHS F30 HD110156NIMH NIH HHS R01 MH117405NINDS NIH HHS F31 NS139508NINDS NIH HHS R01 NS041021NINDS NIH HHS T32 NS121881NINDS NIH HHS U19 NS123719
6 · The paper itself

Abstract

Single-cell transcriptomic studies have identified distinct microglial subpopulations with shared and divergent gene signatures across development, aging, and disease. Whether these microglial subsets represent ontogenically separate lineages of cells or are manifestations of plastic changes in microglial states downstream of some converging signals is unknown. Furthermore, despite the well-established role of enhancer landscapes underlying the identity of microglia, the extent to which histone modifications and DNA methylation regulate microglial state switches at enhancers has not been defined. Here, using genetic fate mapping, we demonstrated the common embryonic origin of proliferative-region-associated microglia enriched in developing white matter and tracked their dynamic transitions into disease-associated microglia and white matter-associated microglia in disease and aging contexts, respectively. This study links spatiotemporally discrete microglial states through their transcriptomic and epigenomic plasticity, while revealing state-specific enhancer histone modifications and transcription regulators that govern state transitions in health and disease.

Indexed as

Cell PlasticityEnhancer Elements, GeneticMicrogliaNeuronal PlasticityAgingAlzheimer DiseaseAnimalsDNA MethylationEpigenesis, GeneticHistone CodeHistonesHumansMiceTranscriptomeWhite MatterHistonesAlzheimer’s diseasedevelopmentdisease-associated microgliaDNA methylationenhancershistone modificationsmicrogliaplasticityproliferative-region-associated microgliawhite matter

Identifiers

PMID41506265
PMCPMC13050238

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.