Evidence map›Paper›PMID 41505086›Full record

ArticleNucleic acids research2026

Activation of bacterial transcription by distortion of promoter base pairing.

Ksenia M Klimova, David Forrest, Prateek Sharma, James R J Haycocks, David C Grainger

Abstract read
In one paragraph

Article in Nucleic acids research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ksenia M KlimovaSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT,United Kingdom.
David ForrestSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT,United Kingdom.
Prateek SharmaSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT,United Kingdom.
James R J HaycocksSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT,United Kingdom.
David C GraingerSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT,United Kingdom.ORCID 0000-0003-3375-5154

Funding

Darwin Trust of EdinburghUniversity of BirminghamWellcome Trust 212193/Z/18/Z
6 · The paper itself

Abstract

Bacterial RNA polymerase binds and unwinds promoter DNA to initiate transcription. The process is often inefficient and can be stimulated by activator proteins. For example, many activators bind RNA polymerase and promoters simultaneously, stabilizing their interaction. Working with the multiple antibiotic resistance activator (MarA) protein of Escherichia coli, we have discovered an alternative mechanism. We show that, when bound upstream of the flgBCDEFGHIJ/KL operon, MarA perturbs base pairing adjacent to its DNA target. This compensates for inefficient duplex unwinding by RNA polymerase and, as a result, activates transcription. Consistent with our model, an appropriate base pair mismatch mimics the effect of, and removes the need for, MarA. As many regulators alter DNA conformation, we suggest that this mechanism of activation could be commonplace.

Indexed as

DNA-Binding ProteinsEscherichia coli ProteinsPromoter Regions, GeneticTranscriptional ActivationBase PairingBase Pair MismatchDNA, BacterialDNA-Directed RNA PolymerasesEscherichia coliOperonDNA, BacterialDNA-Binding ProteinsDNA-Directed RNA PolymerasesEscherichia coli ProteinsMarA protein, E coli

Identifiers

PMID41505086
PMCPMC12781870

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.