Evidence map›Paper›PMID 41499459›Full record

ArticlePloS one2026

Extended-spectrum beta-lactamase-producing Escherichia coli and Klebsiella pneumoniae from human carriage, the human-polluted environment, and food: Molecular epidemiology of two prospective cohorts in five European metropolitan areas.

Tess D Verschuuren, Julia Guther, Maria Eugenia Riccio, Daniel Martak, Elena Salamanca, Siri Göpel, Nadine Conzelmann, Jelle Scharringa, Patrick Musicha, Ingo B Autenrieth and 8 more

Abstract readMulticenter Study
In one paragraph

Article in PloS one, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Tess D VerschuurenMahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Bangkok, Thailand.ORCID https://orcid.org/0000-0002-1448-7425
Julia GutherInstitute of Medical Microbiology and Hygiene, University Hospital Tübingen, Tübingen, Germany.ORCID https://orcid.org/0000-0002-2696-3396
Maria Eugenia RiccioInfection Control Programme and Division of Infectious Diseases, University of Geneva Hospitals and Faculty of Medicine, Geneva, Switzerland.
Daniel MartakInfection Control Unit, Centre de Ressources Biologiques - Filière Microbiologique de Besançon, Centre Hospitalier Universitaire, Besançon, France.ORCID https://orcid.org/0000-0002-7310-9977
Elena SalamancaDepartment of Infectious Diseases and Clinical Microbiology, University Hospital Virgen Macarena, Seville, Spain.
Siri GöpelInfectious Diseases, Department of Internal Medicine, University Hospital Tübingen, Tübingen, Germany.ORCID https://orcid.org/0000-0002-7666-4634
Nadine ConzelmannInfectious Diseases, Department of Internal Medicine, University Hospital Tübingen, Tübingen, Germany.
Jelle ScharringaDepartment of Medical Microbiology, University Medical Centre Utrecht, Utrecht, The Netherlands.
Patrick MusichaCentre for Tropical Medicine & Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Ingo B AutenriethUniversity Hospital Heidelberg, Heidelberg, Germany.
Ben S CooperCentre for Tropical Medicine & Global Health, Nuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Didier HocquetInfection Control Unit, Centre de Ressources Biologiques - Filière Microbiologique de Besançon, Centre Hospitalier Universitaire, Besançon, France.ORCID https://orcid.org/0000-0002-4192-7238
Evelina TacconelliDepartment of Medicine, University of Sevilla/ Biomedicines Institute of Sevilla (IBiS), Sevilla, Spain.
Jesús Rodríguez-BañoDepartment of Infectious Diseases and Clinical Microbiology, University Hospital Virgen Macarena, Seville, Spain.ORCID https://orcid.org/0000-0001-6732-9001
Stephan HarbarthInfection Control Programme and Division of Infectious Diseases, University of Geneva Hospitals and Faculty of Medicine, Geneva, Switzerland.
Ad C FluitDepartment of Medical Microbiology, University Medical Centre Utrecht, Utrecht, The Netherlands.
Silke PeterInstitute of Medical Microbiology and Hygiene, University Hospital Tübingen, Tübingen, Germany.
Jan A J W KluytmansJulius Centre for Health Sciences and Primary Care, University Medical Centre Utrecht, Utrecht, The Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesFor 475 ESBL-producing Escherichia coli (ESBL-Ec), and 171 ESBL-producing Klebsiella pneumoniae (ESBL-Kp) collected from human carriers, the human-polluted (hp)-environment, and food: (i) to compare the antimicrobial resistance gene (ARG) content, and (ii) to assess clonal relationships between human and non-human isolates. MATERIALS AND

methodsTwo prospective multicenter cohorts were assessed: colonized hospitalized index-subjects and household contacts, and long-term care facility (LTCF) residents. Additionally, linked hp-environment and food samples were collected. Presence of ARGs were assessed using pairwise comparisons and proportional similarity index (PSI). Clonal relationships were assessed using cgMLST distance visualizations and maximum likelihood phylogeny.

resultsESBL-Ec and ESBL-Kp co-occurred in 14/65 households, 3/6 LTCFs, and in 33/202 of ESBL-positive participants. Thirty-nine percent of detected ARG types were found in both species (36/93). Frequencies of beta-lactamase, ESBL, aminoglycoside, and sulfonamide ARG types from human ESBL-Ec and ESBL-Kp overlapped considerably: PSIs 0.59-0.75, and were equal or higher compared to the overlap between ESBL-Ec from humans and food isolates: PSIs 0.33-0.72. Isolates from humans and the hp-environment were frequently clonally related, indicating human contamination of the environment. Links with food isolates were observed less frequently. For ESBL-Ec both interregional and regional clonal dissemination were observed, while for ESBL-Kp clonal dissemination was mainly regional.

conclusionsESBL-Ec and ESBL-Kp from human carriage showed considerable overlap in ARG content. Furthermore, clonal links were observed frequently between humans and hp-environment, and with lower frequency between humans and food. These findings are consistent with human-to-human transmission as an important driver of ARG spread in humans.

Indexed as

beta-LactamasesEscherichia coliEscherichia coli InfectionsKlebsiella InfectionsKlebsiella pneumoniaeAgedAnti-Bacterial AgentsCarrier StateEuropeFemaleFood MicrobiologyHumansMaleMiddle AgedMolecular EpidemiologyPhylogenyAnti-Bacterial Agentsbeta-Lactamases

Identifiers

PMID41499459
PMCPMC12779062

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.