Evidence map›Paper›PMID 41499040›Full record

ArticleProbiotics and antimicrobial proteins2026

Exploring the Probiotic and Antimicrobial Potential of Pediococcus Pentosaceus Isolates from Fish: Genomic and Functional Perspectives.

Elionio Galvão Frota, Taís Mayumi Kuniyoshi, Mauro de Medeiros Oliveira, Pamela Oliveira de Souza de Azevedo, Taciana Freire de Oliveira, Luara Lucena Cassiano, Amanda Romana Santos Pessoa, Fernando Moises Mamani Sanca, João Victor Dos Anjos Almeida, Meriellen Dias and 7 more

Abstract read
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In one paragraph

Article in Probiotics and antimicrobial proteins, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Genomic and Phenotypic Characterization of Avian-DerivedAnimals : an open access journal from MDPI · 2026
    Article
  3. Gut-Derived Lactic Acid Bacteria,International journal of microbiology · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Elionio Galvão FrotaSchool of Pharmaceutical Sciences, Department of Biochemical-Pharmaceutical Technology, University of São Paulo, Rua Do Lago, 250, Cidade Universitária, São Paulo, 05508-000, Brazil.ORCID http://orcid.org/0000-0002-0530-6477
Taís Mayumi KuniyoshiSchool of Pharmaceutical Sciences, Department of Biochemical-Pharmaceutical Technology, University of São Paulo, Rua Do Lago, 250, Cidade Universitária, São Paulo, 05508-000, Brazil.ORCID http://orcid.org/0000-0002-0066-2608
Mauro de Medeiros OliveiraDepartment of Agricultural and Environmental Biotechnology, College of Agricultural and Veterinary Sciences, São Paulo State University (UNESP), Jaboticabal, SP, 14884-900, Brazil.ORCID http://orcid.org/0000-0002-2048-6664
Pamela Oliveira de Souza de AzevedoSchool of Pharmaceutical Sciences, Department of Biochemical-Pharmaceutical Technology, University of São Paulo, Rua Do Lago, 250, Cidade Universitária, São Paulo, 05508-000, Brazil.ORCID http://orcid.org/0000-0002-9904-5254
Taciana Freire de OliveiraSchool of Pharmaceutical Sciences, Department of Biochemical-Pharmaceutical Technology, University of São Paulo, Rua Do Lago, 250, Cidade Universitária, São Paulo, 05508-000, Brazil.ORCID http://orcid.org/0000-0003-1075-7966
Luara Lucena CassianoAquaculture Research Center, São Paulo Fisheries Institute/APTA/SAA, São Paulo, Brazil.ORCID http://orcid.org/0000-0002-0595-7886
Amanda Romana Santos PessoaSchool of Pharmaceutical Sciences, Department of Biochemical-Pharmaceutical Technology, University of São Paulo, Rua Do Lago, 250, Cidade Universitária, São Paulo, 05508-000, Brazil.ORCID http://orcid.org/0000-0002-6424-5758
Fernando Moises Mamani SancaSchool of Pharmaceutical Sciences, Department of Biochemical-Pharmaceutical Technology, University of São Paulo, Rua Do Lago, 250, Cidade Universitária, São Paulo, 05508-000, Brazil.ORCID http://orcid.org/0009-0000-1543-5312
João Victor Dos Anjos AlmeidaDepartment of Agricultural and Environmental Biotechnology, College of Agricultural and Veterinary Sciences, São Paulo State University (UNESP), Jaboticabal, SP, 14884-900, Brazil.ORCID http://orcid.org/0000-0003-1255-5831
Meriellen DiasSchool of Pharmaceutical Sciences, Department of Biochemical-Pharmaceutical Technology, University of São Paulo, Rua Do Lago, 250, Cidade Universitária, São Paulo, 05508-000, Brazil.ORCID http://orcid.org/0000-0002-2600-4582
Bruna Souza da SilvaSchool of Pharmaceutical Sciences, Department of Biochemical-Pharmaceutical Technology, University of São Paulo, Rua Do Lago, 250, Cidade Universitária, São Paulo, 05508-000, Brazil.ORCID http://orcid.org/0000-0002-5854-1980
Nathalia Vieira Porphirio VeríssimoSchool of Pharmaceutical Sciences, Department of Biochemical-Pharmaceutical Technology, University of São Paulo, Rua Do Lago, 250, Cidade Universitária, São Paulo, 05508-000, Brazil.ORCID http://orcid.org/0000-0001-9978-6864
Martin GierusInstitute of Animal Nutrition, Livestock Products, and Nutrition Physiology, Department of Agricultural Sciences, BOKU University, Muthgasse 11/I, 1190, Vienna, Austria.ORCID http://orcid.org/0000-0001-6909-0356
Jean Guy LeBlancCentro de Referencia para Lactobacilos (CERELA-CONICET), San Miguel de Tucumán, Tucumán, Argentina.ORCID http://orcid.org/0000-0002-4634-8630
Alessandro de Mello VaraniDepartment of Agricultural and Environmental Biotechnology, College of Agricultural and Veterinary Sciences, São Paulo State University (UNESP), Jaboticabal, SP, 14884-900, Brazil.ORCID http://orcid.org/0000-0002-8876-3269
Leonardo TachibanaAquaculture Research Center, São Paulo Fisheries Institute/APTA/SAA, São Paulo, Brazil.ORCID http://orcid.org/0000-0002-5847-8723
Ricardo Pinheiro de Souza OliveiraSchool of Pharmaceutical Sciences, Department of Biochemical-Pharmaceutical Technology, University of São Paulo, Rua Do Lago, 250, Cidade Universitária, São Paulo, 05508-000, Brazil. rpsolive@usp.br.ORCID http://orcid.org/0000-0001-8590-804X

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico 304635/2025-1Coordenação de Aperfeiçoamento de Pessoal de Nível Superior Finance Code 001Fundação de Amparo à Pesquisa do Estado de São Paulo 2018/25511-1Fundação de Amparo à Pesquisa do Estado de São Paulo 2024/13526-5
6 · The paper itself

Abstract

Aquaculture faces increasing challenges related to disease management and the need for sustainable alternatives to antibiotics that ensure productivity, fish welfare, and environmental sustainability. Probiotic bacteria, particularly lactic acid bacteria (LAB), have emerged as promising candidates for improving fish health through intestinal colonization, competitive exclusion of pathogens, and production of bioactive compounds. This study reports the phenotypic and genomic characterization of four Pediococcus pentosaceus strains (BE2, BE6, BE8, and BE9) isolated from the intestinal microbiota of freshwater fish (Cichlasoma spp.). Safety assessments revealed no hemolytic activity, coagulase production, or gelatinase activity, and antibiotic susceptibility profiles were consistent with international guidelines for probiotic candidates. The isolates demonstrated in vitro tolerance to acidic pH and bile salts, with viable counts decreasing by less than 2 log units under simulated gastrointestinal conditions. Adhesion assays using human Caco-2 cells showed approximately 30% adhesion efficiency. All strains exhibited growth on prebiotic substrates, including mannan oligosaccharides (MOS), fructo-oligosaccharides (FOS), and inulin (INU), with strain-specific preferences. Genomic analyses confirmed species-level identity and revealed biosynthetic gene clusters associated with the production of vitamins such as riboflavin, bacteriocins including penocin A and pediocin PA-1, alongside intrinsic resistance and stress response genes. Cell-free supernatants inhibited key aquaculture pathogens (Streptococcus agalactiae, Aeromonas hydrophila, and Francisella orientalis) in agar diffusion assays, suggesting antimicrobial potential mediated by bacteriocins identified in your genome. Therefore, the isolated strains exhibit promising functional and genomic characteristics, supporting their potential use as probiotics and components of synbiotic consortia for aquaculture applications.

Indexed as

Anti-Bacterial AgentsFishesPediococcus pentosaceusProbioticsAnimalsCaco-2 CellsHumansAnti-Bacterial AgentsAquacultureBacteriocinLactic acid bacteriaMOSPrebioticVitamin b

Identifiers

PMID41499040

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.