Evidence map›Paper›PMID 41495045›Full record

ArticleNature communications2026

Deep learning guided design of protease substrates.

Carmen Martin-Alonso, Sarah Alamdari, Tahoura S Samad, Kevin K Yang, Sangeeta N Bhatia, Ava P Amini

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Carmen Martin-Alonso *Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA.
Sarah Alamdari *Microsoft Research, Cambridge, MA, USA.
Tahoura S SamadKoch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA.
Kevin K YangMicrosoft Research, Cambridge, MA, USA.ORCID 0000-0001-9045-6826
Sangeeta N BhatiaKoch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA. sbhatia@mit.edu.ORCID 0000-0002-1293-2097
Ava P AminiMicrosoft Research, Cambridge, MA, USA. ava.amini@microsoft.com.ORCID 0000-0002-8601-6040

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Proteases, enzymes that play critical roles in health and disease, exert their function through the cleavage of peptide bonds. Identifying substrates that are efficiently and selectively cleaved by target proteases is essential for studying protease activity and for harnessing it in protease-activated diagnostics and therapeutics. However, the vast design space of possible substrates (c.a. 20

Indexed as

Deep LearningPeptide HydrolasesHumansMatrix Metalloproteinase 13PeptidesProteolysisSubstrate SpecificityMatrix Metalloproteinase 13Peptide HydrolasesPeptides

Identifiers

PMID41495045
PMCPMC12775482

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.