Evidence map›Paper›PMID 41493514›Full record

ArticleInfectious diseases and therapy2026

Clinical Phenotypes of Critically Ill Patients with COVID-19 Infected with Omicron: A Nationwide Prospective Cohort Study.

Etienne Audureau, Pierre Bay, Sébastien Préau, Raphaël Favory, Aurélie Guigon, Nicholas Heming, Elyanne Gault, Tài Pham, Amal Chaghouri, Matthieu Turpin and 26 more

Registry-linked trialAbstract read
In one paragraph

Article in Infectious diseases and therapy, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT05162508 (Characterization of the Impact of SARS-CoV-2 Variability on the Course of COVID-19 in Patients With Severe Disease Hospitalized in Intensive Care Units), which is not on this map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05162508 unknown statusnot on this map

Characterization of the Impact of SARS-CoV-2 Variability on the Course of COVID-19 in Patients With Severe Disease Hospitalized in Intensive Care Units: Prospective Observational Multicentric Study

TypeobservationalSponsorAssistance Publique - Hôpitaux de ParisRan2021 to 2026Enrolled2,000ConditionsSARS-CoV2 Infection, COVID-19 Acute Respiratory Distress Syndrome, MutationArmsNasopharyngeal swab
3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

36 authors.

Etienne Audureau *Université Paris-Est-Créteil (UPEC), Créteil, France.
Pierre Bay *DMU Médecine, Service de Médecine Intensive Réanimation, Hôpitaux Universitaires Henri Mondor, Assistance Publique, Hôpitaux de Paris (AP-HP), CHU Henri Mondor, 51, Av. de Lattre de Tassigny, CEDEX, 94010, Créteil, France. pierre.bay@aphp.fr.ORCID http://orcid.org/0000-0002-6751-2110
Sébastien PréauU1167, RID-AGE Facteurs de Risque et Déterminants Moléculaires des Maladies Liées au Vieillissement, University Lille, Inserm, CHU Lille, Institut Pasteur de Lille, 59000, Lille, France.
Raphaël FavoryU1167, RID-AGE Facteurs de Risque et Déterminants Moléculaires des Maladies Liées au Vieillissement, University Lille, Inserm, CHU Lille, Institut Pasteur de Lille, 59000, Lille, France.
Aurélie GuigonService de Virologie, CHU de Lille, 59000, Lille, France.
Nicholas HemingMédecine Intensive Réanimation, Hôpital Raymond Poincaré, Assistance Publique, Hôpitaux de Paris (AP-HP), Garches, France.
Elyanne GaultLaboratoire de Virologie, Hôpital Ambroise Paré, Assistance Publique, Hôpitaux de Paris (AP-HP), Boulogne, France.
Tài PhamGroupe de Recherche Clinique CARMAS, Université Paris-Est-Créteil (UPEC), Créteil, France.
Amal ChaghouriLaboratoire de Virologie, Hôpital Paul Brousse, Hôpitaux de Paris, Assistance Publique, Villejuif, France.
Matthieu TurpinSorbonne Université, Centre de Recherche Saint-Antoine INSERM, Médecine Intensive Réanimation, Hôpital Tenon, Assistance Publique, Hôpitaux de Paris, Paris, France.
Laurence Morand-JoubertSorbonne Université, INSERM, Institut Pierre Louis d'Epidémiologie et de Santé Publique, Paris, France.
Sébastien JochmansService de Réanimation Polyvalente, Hôpital Marc Jacquet, Melun, France.
Aurélia PitschLaboratoire de Microbiologie, Hôpital Marc Jacquet, Melun, France.
Sylvie MeirelesService de Réanimation Médico-Chirurgicale, Assistance Publique-Hôpitaux de Paris, Hôpital Ambroise Paré, Boulogne, France.
Damien ContouService de Réanimation, Hôpital Victor Dupouy, Argenteuil, France.
Amandine HenryService de Virologie, Hôpital Victor Dupouy, Argenteuil, France.
Damien RouxAP-HP, Hôpital Louis Mourier, DMU ESPRIT, Service de Médecine Intensive Réanimation, 92700, Colombes, France.
Quentin Le HingratUniversité de Paris, IAME INSERM UMR 1137, Service de Virologie, Hôpital Bichat-Claude Bernard, Assistance Publique, Hôpitaux de Paris, Paris, France.
Antoine KimmounUniversité de Lorraine, CHRU de Nancy, Médecine Intensive et Réanimation Brabois, Vandœuvre-Lès-Nancy, France.
Cédric HartardUniversité de Lorraine, CNRS, LCPME, 54000, Nancy, France.
Frédéric PèneMédecine Intensive Réanimation, Hôpital Cochin, Assistance Publique, Hôpitaux de Paris, Paris, France.
Anne-Sophie L'HonneurLaboratoire de Virologie, Hôpital Cochin, Hôpitaux de Paris, Assistance Publique, Paris, France.
Antoine GuillonIntensive Care Unit, Tours University Hospital, Research Center for Respiratory Diseases (CEPR), INSERM U1100, University of Tours, Tours, France.
Lynda HandalaINSERM U1259, Université de Tours, Tours, France.
Fabienne TamionService de Médecine Intensive-Réanimation, CHU De Rouen, Rouen, France.
Alice MoisanDepartment of Virology, Univ Rouen Normandie, Université de Caen Normandie, INSERM, Normandie Univ, DYNAMICURE UMR 1311, CHU Rouen, 76000, Rouen, France.
Thomas DaixRéanimation Polyvalente, INSERM CIC 1435 and UMR 1092, CHU Limoges, Limoges, France.
Sébastien HantzFrench National Reference Center for Herpesviruses, Bacteriology, Virology, Hygiene Department, CHU Limoges, 87000, Limoges, France.
Flora DelamaireCHU Rennes, Maladies Infectieuses et Réanimation Médicale, Rennes, France.
Vincent ThibaultLaboratoire de Virologie, CHU Rennes, 35000, Rennes, France.
Cédric DarreauCH Le Mans, Service de Réanimation Médico-Chirurgicale, Le Mans, France.
Jean ThominLaboratoire de Microbiologie, CH Le Mans, Le Mans, France.
Jean-Michel PawlotskyGroupe de Recherche Clinique CARMAS, Université Paris-Est-Créteil (UPEC), Créteil, France.
Slim Fourati *Groupe de Recherche Clinique CARMAS, Université Paris-Est-Créteil (UPEC), Créteil, France.
Nicolas de Prost *Université Paris-Est-Créteil (UPEC), Créteil, France.
SEVARVIR investigators

Funding

EMERGEN consortium-ANRS Maladies Infectieuses Emergentes ANRS0153
6 · The paper itself

Abstract

introductionThe clinical presentation of critically ill patients with coronavirus disease 2019 (COVID-19) has evolved significantly with the emergence of the Omicron variant. Current intensive care unit (ICU) admissions involve patients with diverse comorbidities and immune statuses, highlighting the need to redefine homogeneous phenotypic subgroups within this population. This study aimed to characterize distinct clinical phenotypes among critically ill patients with COVID-19 and acute respiratory failure.

methodsThis multicenter prospective substudy of the SEVARVIR cohort included adult patients from 39 French ICUs between December 2021 and October 2024 with acute respiratory failure and infected with the Omicron variant. Clustering analysis was conducted using Kohonen's self-organizing maps (SOMs) and validated with ClinTrajan, two unsupervised clustering methods, to identify homogeneous patient phenotypes.

resultsDuring the study period, 777 patients with Omicron infection were included, and 7 distinct clinical clusters were identified. Clusters 1 and 2 included patients with metabolic and cardiovascular comorbidities. Cluster 3 featured younger, mildly ill patients with isolated chronic respiratory failure, while cluster 4 comprised older male patients with isolated respiratory failure. Cluster 5 included patients with isolated hematologic malignancies, cluster 6 patients with multiorgan failure, and cluster 7 organ transplant recipients, with high severity scores and impaired renal function. ICU management varied substantially across clusters. Patients in clusters 5 and 7 had the highest requirements for organ support, with frequent use of invasive mechanical ventilation, vasopressors (cluster 6), and renal replacement therapy (cluster 7). Dexamethasone and tocilizumab were most commonly prescribed in cluster 4 (91.3% and 30.2%, respectively). Mortality at day 28 varied significantly across clusters, ranging from 13.1% in cluster 3 to 41.1% in cluster 6.

conclusionsThis clustering analysis highlights, for the first time, the clinical heterogeneity of critically ill patients infected with Omicron, identifying seven distinct clusters with varying clinical presentations, management strategies and outcomes. These findings underscore the relevance of a phenotype-driven approach to support personalized treatment strategies and guide future clinical trials.

trial registrationClinicaltrials.gov, NCT05162508. A Graphical Abstract is available for this article.

Indexed as

Acute respiratory distress syndromeAcute respiratory failureCOVID-19Intensive care unitOmicronPrecision medicineSARS-CoV-2

Identifiers

PMID41493514
PMCPMC12855665

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.