Evidence map›Paper›PMID 41493443›Full record

ArticleChemical communications (Cambridge, England)2026

Electric fields enhance Diels-Alderase catalysis in abyssomicin C biosynthesis.

Rodrigo Recabarren, Sam T Johns, H Adrian Bunzel, Esteban Vöhringer-Martinez, Marc W van der Kamp

Abstract read
In one paragraph

Article in Chemical communications (Cambridge, England), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Rodrigo RecabarrenDepartamento de Físico-Química, Facultad de Ciencias Químicas, Universidad de Concepción, Concepción, Chile. evohringer@udec.cl.ORCID http://orcid.org/0000-0003-1615-5894
Sam T JohnsSchool of Biochemistry, University of Bristol, Bristol BS8 1TD, UK. marc.vanderkamp@bristol.ac.uk.
H Adrian BunzelMax Planck Institute for Terrestrial Microbiology, Marburg, Germany.ORCID http://orcid.org/0000-0001-6427-368X
Esteban Vöhringer-MartinezDepartamento de Físico-Química, Facultad de Ciencias Químicas, Universidad de Concepción, Concepción, Chile. evohringer@udec.cl.ORCID http://orcid.org/0000-0003-1785-4558
Marc W van der KampSchool of Biochemistry, University of Bristol, Bristol BS8 1TD, UK. marc.vanderkamp@bristol.ac.uk.ORCID http://orcid.org/0000-0002-8060-3359

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Natural Diels-Alderases catalyse [4+2] cycloadditions by preorganizing substrates into reactive conformations. However, the roles of other catalytic factors, such as electrostatic effects, remain elusive. Here, we combine conceptual density functional theory (CDFT) descriptors and electric field analysis to unravel the electrostatic basis of activity in the Diels-Alderase AbyU. Previously, four different enzyme-substrate poses were identified, of which two showed catalytically favorable free energy barriers based on quantum mechanical/molecular mechanical (QM/MM) reaction simulations. Here, we show that atom-condensed Fukui functions can predict the reactivity from reactant conformations alone, focusing on the diene carbons involved in bond formation. The importance of the enzyme-diene interaction is supported by electric field analysis, which shows how reactivity of enzyme-substrate poses correlates with alignment of the enzyme field along the diene moiety. Our findings establish a basis for predicting and engineering Diels-Alderase activity based on electrostatic and electronic reactivity features.

Indexed as

BiocatalysisBridged Bicyclo Compounds, HeterocyclicCycloaddition ReactionDensity Functional TheoryStatic Electricityabyssomicin CBridged Bicyclo Compounds, Heterocyclic

Identifiers

PMID41493443
PMCPMC12772626

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.