ArticleScientific data2026
Chromosome-scale assembly and annotation of Phytophthora capsici isolate BYA5.
Article in Scientific data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Abstract
Phytophthora capsici is a globally widespread oomycete pathogen that causes severe damage to diverse host plants, posing major agricultural challenges. Here, we present a high-quality, chromosome-level genome assembly of P. capsici isolate BYA5 using PacBio HiFi, ultralong Oxford Nanopore, and Hi-C sequencing data. The assembled genome spans 83.96 Mb and comprises 18 chromosomes, capturing all centromeres and most telomeres (32/36). The assembled genome exhibits a contiguous N50 of 3.84 Mb, representing the first chromosome-level genome sequence of a pathogenic P. capsici. A total of 15,688 protein-coding genes were annotated, including 337 RxLRs and 115 Crinkler (CRN) effectors. This high-quality reference genome provides a valuable resource for advancing our understanding of oomycete pathobiology and evolution, facilitating further research on virulence mechanisms and host-pathogen interactions.
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