Evidence map›Paper›PMID 41487227›Full record

ArticleACS omega2025

Fluorophore Design via Generative Modeling in a Curated Subspace.

Bomin Kim, Islambek Ashyrmamatov, Umit V Ucak, Juyong Lee

Abstract read
In one paragraph

Article in ACS omega, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Bomin KimCollege of Pharmacy, Seoul National University, Seoul 08826, Republic of Korea.ORCID https://orcid.org/0009-0005-0226-7467
Islambek AshyrmamatovCollege of Pharmacy, Seoul National University, Seoul 08826, Republic of Korea.
Umit V UcakResearch Institute of Pharmaceutical Sciences, College of Pharmacy, Seoul National University, Seoul 08826, Republic of Korea.ORCID https://orcid.org/0000-0002-9088-0915
Juyong LeeCollege of Pharmacy, Seoul National University, Seoul 08826, Republic of Korea.ORCID https://orcid.org/0000-0003-1174-4358

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We present a fluorescence-oriented molecular design strategy that integrates multiple generative models within a chemically constrained and photophysically relevant subspace. Rather than relying on large-scale data sets or model-specific tuning, our approach builds on a curated training set constructed exclusively from atom-in-SMILES (AIS) fragments spanning chromophore-like molecules. The pipeline accommodates reinforcement learning-based ReLeaSE, which employs AIS-based tokenization, MolDQN, which utilizes a graph-based molecular representation, and the combinatorial optimization-based MolFinder, which operates on SMILES strings, each guided by a semiheuristic objective function targeting excitation energy, oscillator strength, and fluorophore similarity. Despite the compact training corpus, the pipeline yields structurally novel and optically active molecules, validated via QM calculations at the sTDA/CAM-B3LYP level. Our findings demonstrate that strategic data curation and property-driven integration can enable general-purpose models to succeed in specialized discovery tasks such as de novo fluorophore design.

Identifiers

PMID41487227
PMCPMC12756792

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.