Evidence map›Paper›PMID 41483150›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2026

A genome-wide association analysis identifies a key candidate gene controlling plant growth habit in chickpea.

Rajib Kumbhakar, Mayulika Mondal, Virevol Thakro, Yashwant K Yadava, Uday Chand Jha, Shailesh Tripathi, Swarup K Parida

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Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Rajib KumbhakarGenomics-Assisted Breeding and Crop Improvement Laboratory, Biotechnology Research and Innovation Council-National Institute of Plant Genome Research (BRIC-NIPGR), Aruna Asaf Ali Marg, New Delhi, 110067, India.
Mayulika MondalGenomics-Assisted Breeding and Crop Improvement Laboratory, Biotechnology Research and Innovation Council-National Institute of Plant Genome Research (BRIC-NIPGR), Aruna Asaf Ali Marg, New Delhi, 110067, India.
Virevol ThakroGenomics-Assisted Breeding and Crop Improvement Laboratory, Biotechnology Research and Innovation Council-National Institute of Plant Genome Research (BRIC-NIPGR), Aruna Asaf Ali Marg, New Delhi, 110067, India.
Yashwant K YadavaGenomics-Assisted Breeding and Crop Improvement Laboratory, Biotechnology Research and Innovation Council-National Institute of Plant Genome Research (BRIC-NIPGR), Aruna Asaf Ali Marg, New Delhi, 110067, India.
Uday Chand JhaIndian Institute of Pulses Research (IIPR), Kanpur, Uttar Pradesh, 208024, India.
Shailesh TripathiIndian Institute of Pulses Research (IIPR), Kanpur, Uttar Pradesh, 208024, India. shaitri@rediffmail.com.
Swarup K ParidaGenomics-Assisted Breeding and Crop Improvement Laboratory, Biotechnology Research and Innovation Council-National Institute of Plant Genome Research (BRIC-NIPGR), Aruna Asaf Ali Marg, New Delhi, 110067, India. swarupdbt@gmail.com.ORCID http://orcid.org/0000-0001-7843-3031

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageIntegrated genome-wide and haplotype-based association analyses identified a key genomic locus governing plant growth habit (PGH) traits in chickpea. Identification of molecular markers governing plant growth habit (PGH) traits that enable mechanical harvestability is pivotal for boosting production efficiency of crops under changing climates and increasing global food demand. With a combinatorial integrated genomics-assisted breeding strategy comprising of association mapping, haplotype-based association, molecular haplotyping and gene expression analysis in a 286 association panel of chickpea (Cicer arietinum), we dissected the genetic basis of PGH traits. This study employed 382,171 genome-wide SNPs (single-nucleotide polymorphisms) obtained from whole-genome sequencing (WGS) of 286 desi and kabuli chickpea accessions and delineated a major genomic locus associated with PGH traits variation, particularly between erect (E)/semi-erect (SE) versus spreading (S)/semi-spreading (SS) types. Within this genomic loci, CaPAR1 (Cicer arietinum PAR1) and its derived natural alleles/haplotypes was identified as the candidate gene. These findings can facilitate generation of high-yielding, erect/semi-erect, mechanically harvestable cultivars through translational genomics and molecular breeding for genetic enhancement of chickpea.

Indexed as

CicerGenes, PlantPlant ProteinsChromosome MappingGene Expression Regulation, PlantGenome, PlantGenome-Wide Association StudyHaplotypesPhenotypePlant BreedingPolymorphism, Single NucleotideQuantitative Trait LociPlant Proteins

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.