Evidence map›Paper›PMID 41482742›Full record

ArticleG3 (Bethesda, Md.)2026

Identification of regulatory candidate genes for Lentinula edodes pileus development based on transcriptome analysis.

Xia Zhao, ChenYin Wu, HuaFang You, YanJun Xu, XingXue Zha, Liu Song, Juan Xu, HaoYuan Tian

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Xia ZhaoCollege of Agriculture, Guizhou University, Guiyang, Guizhou 550025, China.
ChenYin WuCollege of Agriculture, Guizhou University, Guiyang, Guizhou 550025, China.
HuaFang YouCollege of Agriculture, Guizhou University, Guiyang, Guizhou 550025, China.
YanJun XuCollege of Agriculture, Guizhou University, Guiyang, Guizhou 550025, China.ORCID 0009-0001-6664-7953
XingXue ZhaCollege of Agriculture, Guizhou University, Guiyang, Guizhou 550025, China.
Liu SongCollege of Agriculture, Guizhou University, Guiyang, Guizhou 550025, China.
Juan XuCollege of Agriculture, Guizhou University, Guiyang, Guizhou 550025, China.
HaoYuan TianCollege of Agriculture, Guizhou University, Guiyang, Guizhou 550025, China.

Funding

Guizhou Provincial Science and Technology Achievements Project 007 [2024]Technology Integration and Demonstration of Efficient Cucurbits/Fruit-Mushroom Intercropping for Summer Cultivation
6 · The paper itself

Abstract

The pileus serves as a primary determinant of market grade and commercial value in Lentinula edodes. To elucidate the molecular mechanisms governing pileus development, we conducted comparative transcriptome analysis via RNA sequencing across 3 distinct developmental stages: Early button stage, Young fruiting body stage, and mature fruiting body stage. Gene expression profiling revealed a substantial number of differentially expressed genes (DEGs) between stages, with 283 conserved DEGs spanning the entire developmental continuum. Systematic mining of these conserved DEGs identified 3 candidate regulatory genes encoding: Alpha-amylase, Heat shock protein 70 (HSP70), Phosphatidylserine decarboxylase. Quantitative PCR validation confirmed the accuracy of both RNA-Seq data and DEG identification. Enzymatic activity assays demonstrated significant stage-specific variations in: Antioxidant enzyme activities, Membrane lipid peroxidation levels. This study provides valuable insights into the molecular framework underlying pileus morphogenesis in Lentinula edodes.

Indexed as

Gene Expression ProfilingGene Expression Regulation, FungalGenes, RegulatorShiitake MushroomsTranscriptomeFruiting Bodies, FungalFungal ProteinsGene Expression Regulation, DevelopmentalFungal Proteinscomparative transcriptomicsdifferentially expressed genesLentinula edodespileus

Identifiers

PMID41482742
PMCPMC12958818

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.