Evidence map›Paper›PMID 41481642›Full record

ArticlePloS one2026

Genetic mapping and candidate gene identification for key physiological traits associated with heat tolerance in wheat (Triticum aestivum L.) using a MAGIC population.

Ananta Bag, Hari Krishna, Vinodh Kumar P N, Shiwani Meena, Narayana Bhat Devate, Sudhir Kumar, Ravindra Patil, Uday Govinda Reddy, Amit Kumar Singh, Badal Singh and 3 more

Abstract read
In one paragraph

Article in PloS one, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
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1 · What the graph read from it

What it found

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2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Ananta BagDivision of Genetics, Indian Agricultural Research Institute, New Delhi, India.ORCID https://orcid.org/0009-0009-2059-3185
Hari KrishnaDivision of Genetics, Indian Agricultural Research Institute, New Delhi, India.ORCID https://orcid.org/0000-0002-7563-8362
Vinodh Kumar P NDivision of Genetics, Indian Agricultural Research Institute, New Delhi, India.
Shiwani MeenaDivision of Genetics, Indian Agricultural Research Institute, New Delhi, India.
Narayana Bhat DevateDivision of Genetics, Indian Agricultural Research Institute, New Delhi, India.
Sudhir KumarDivision of Plant Physiology, Indian Agricultural Research Institute, New Delhi, India.
Ravindra PatilGenetics and Plant Breeding Group, Agharkar Research Institute, Pune, India.
Uday Govinda ReddyDepartment of Genetics and Plant Breeding, University of Agricultural Sciences, Dharwad, India.
Amit Kumar SinghDivision of Genomic Resources, ICAR-National Bureau of Plant Genetic Resources, New Delhi, India.
Badal SinghDivision of Germplasm Evaluation, ICAR-National Bureau of Plant Genetic Resources, New Delhi, India.
Neelu JainDivision of Genetics, Indian Agricultural Research Institute, New Delhi, India.
Pradeep Kumar SinghDivision of Genetics, Indian Agricultural Research Institute, New Delhi, India.
Gyanendra Pratap SinghDivision of Genetics, Indian Agricultural Research Institute, New Delhi, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A comprehensive evaluation of 248 MAGIC population-derived wheat lines and their eight founder lines revealed significant genetic variation and adaptive diversity for key physiological traits- NDVI_1-3, SPAD chlorophyll content, canopy temperature (CT), and chlorophyll fluorescence (Fv/Fm UP and LW) under timely sown (TSIR) and late-sown (LSIR) irrigated conditions across multiple locations. Genotypes under TSIR exhibited higher canopy greenness, chlorophyll stability, and photosynthetic efficiency, whereas LSIR induced elevated CT and reduced SPAD, indicating genotypic differences in heat tolerance. Correlation and PCA analyses showed strong interrelationships among traits, with NDVI positively correlated with SPAD and Fv/Fm (r = 0.52-0.86) and negatively with CT (r = -0.13 to -0.60). PCA identified two principal adaptive axes- vigour/biomass (NDVI-CT) and pigment/stress (SPAD-Fv/Fm), explaining 65-82% of total variation. GWAS detected 54 significant marker-trait associations, predominantly on chromosome 5A, with major loci AX-95210025, AX-94980357, and AX-94448771 influencing NDVI, SPAD chlorophyll content, CT, and Fv/Fm (UP and LW). Favorable alleles enhanced canopy vigour and chlorophyll content while reducing CT, signifying integrated genetic control of photosynthetic resilience and thermal regulation. In-silico and gene regulatory network (GRN) analyses identified key heat-responsive candidate genes including TraesCS5A02G078000 (Heat shock cognate 70 kDa protein), TraesCS5A02G077900 (DnaJ co-chaperone), TraesCS1A02G098800 (DUF4408 domain protein), TraesCS7A02G143900 (Hydroxyproline O-arabinosyltransferase-like protein), and TraesCS7B02G083500 (Small heat shock protein) that regulate chlorophyll maintenance, PSII repair, and canopy cooling under stress. Collectively, this study elucidates the genetic and physiological basis of heat tolerance in the MAGIC population and identifies robust targets for marker-assisted selection and genomic improvement of thermotolerant wheat.

Indexed as

ThermotoleranceTriticumChlorophyllChromosome MappingGenes, PlantGenome-Wide Association StudyGenotypeHot TemperaturePhenotypePhotosynthesisQuantitative Trait LociChlorophyll

Identifiers

PMID41481642
PMCPMC12758712

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.