Evidence map›Paper›PMID 41481463›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2026

Gene duplication, horizontal gene transfer, and trait trade-offs drive evolution of postfire resource acquisition in pyrophilous fungi.

Ehsan Sari, Dylan J Enright, Maria E Ordoñez, Steven D Allison, Peter M Homyak, Michael J Wilkins, Sydney I Glassman

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ehsan SariDepartment of Microbiology and Plant Pathology, University of California, Riverside, CA 92521.ORCID 0000-0002-8813-5465
Dylan J EnrightDepartment of Microbiology and Plant Pathology, University of California, Riverside, CA 92521.
Maria E OrdoñezDepartment of Microbiology and Plant Pathology, University of California, Riverside, CA 92521.ORCID 0009-0000-2055-4324
Steven D AllisonDepartment of Ecology and Evolutionary Biology, University of California, Irvine, CA 92697.ORCID 0000-0003-4629-7842
Peter M HomyakDepartment of Environmental Sciences, University of California, Riverside, CA 92521.ORCID 0000-0003-0671-8358
Michael J WilkinsDepartment of Soil and Crop Sciences, Colorado State University, Fort Colins, CO 80523.
Sydney I GlassmanDepartment of Microbiology and Plant Pathology, University of California, Riverside, CA 92521.ORCID 0000-0001-9115-3026

Funding

DOE | SC | Biological and Environmental Research (BER) DE-SC0023127USDA | National Institute of Food and Agriculture (NIFA) 2022-67014-36675
6 · The paper itself

Abstract

Wildfires significantly alter soil carbon (C) and nitrogen (N), reducing microbial richness and biomass, while selecting for "fire-loving" pyrophilous microbes that drive postfire nutrient cycling. However, the genomic strategies and functional trade-offs (balancing gains in one trait with costs in another) underlying the traits that enable pyrophilous microbes to survive and thrive postfire are virtually unknown. We hypothesized that pyrophilous fungi employ specialized genomic adaptations for C and N cycling, with evolutionary trade-offs between traits governing aromatic C degradation, N acquisition pathways, and rapid growth. To test these hypotheses, we performed complementary comparative genomics, transcriptomics after pyrogenic organic matter amendment, and growth rate bioassays for 18 pyrophilous fungi from five Ascomycota (Eurotiales, Pleosporales, Sordariales, Coniochaetales, and Pezizales) and three Basidiomycota (Agaricales, Holtermanniales, and Geminibasidiales) orders isolated from burned soils. We found a dramatic trait trade-off between fast growth and number of genes responsible for aromatic C degradation, implying burned environments select for metabolically costly genes despite their evolutionary cost. We used the comparative genomics framework to evaluate genomic signatures of evolution and found that either gene duplication and somatic mutation, or recombination via sexual reproduction, were the primary drivers of fungal genomic variation in aromatic C degradation and N acquisition genes. Finally, we identified cross-kingdom bacterial to fungal horizontal gene transfer (HGT) as a secondary strategy producing novel aromatic C degradation genes. Overall, we found that trait trade-offs and genome evolutionary strategies are key drivers that may predict the persistence and contribution of pyrophilous fungi to global C and N cycling.

Indexed as

FiresFungiGene DuplicationGene Transfer, HorizontalAscomycotaBiological EvolutionCarbonEvolution, MolecularNitrogenPhylogenySoil MicrobiologyCarbonNitrogenaromatic carbon degradationcomparative genomicsnitrogen acquisitionpyrophilous fungitrait-trade-off

Identifiers

PMID41481463
PMCPMC12773724

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.