Evidence map›Paper›PMID 41481455›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2026

E2 variants for probing E3 ubiquitin ligase activities.

Jiale Du, Gisele A Andree, Daniel Horn-Ghetko, Luca Stier, Jaspal Singh, Sebastian Kostrhon, Leo Kiss, Matthias Mann, Sachdev S Sidhu, Brenda A Schulman

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Jiale DuDepartment of Molecular Machines and Signaling, Max Planck Institute of Biochemistry, Martinsried 82152, Germany.ORCID 0000-0003-1410-7020
Gisele A AndreeDepartment of Molecular Machines and Signaling, Max Planck Institute of Biochemistry, Martinsried 82152, Germany.ORCID 0000-0002-5620-6951
Daniel Horn-GhetkoDepartment of Molecular Machines and Signaling, Max Planck Institute of Biochemistry, Martinsried 82152, Germany.ORCID 0000-0003-2290-2147
Luca StierDepartment of Molecular Machines and Signaling, Max Planck Institute of Biochemistry, Martinsried 82152, Germany.
Jaspal SinghSchool of Pharmacy, University of Waterloo, Waterloo, ON N2L 3G1, Canada.
Sebastian KostrhonDepartment of Molecular Machines and Signaling, Max Planck Institute of Biochemistry, Martinsried 82152, Germany.
Leo KissDepartment of Molecular Machines and Signaling, Max Planck Institute of Biochemistry, Martinsried 82152, Germany.
Matthias MannDepartment of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried 82152, Germany.ORCID 0000-0003-1292-4799
Sachdev S SidhuSchool of Pharmacy, University of Waterloo, Waterloo, ON N2L 3G1, Canada.ORCID 0000-0001-7755-5918
Brenda A SchulmanDepartment of Molecular Machines and Signaling, Max Planck Institute of Biochemistry, Martinsried 82152, Germany.ORCID 0000-0002-3083-1126

Funding

Boehringer Ingelheim Fonds (BIF) PhD FellowshipDeutsche Forschungsgemeinschaft (DFG) SCH3196/1-1European Molecular Biology Organization (EMBO) ALTF 627-2022Max Planck Society Mann DepartmentMax Planck Society Schulman Department
6 · The paper itself

Abstract

E3 ligases partner with E2 enzymes to regulate vast eukaryotic biology. The hierarchical nature of these pairings, with >600 E3s and ~40 E2s in humans, necessitates that E2s cofunction with numerous different E3s. Here, focusing on E3s in the RING-between-RING (RBR) family and their partner UBE2L3 and UBE2D-family E2s, we report an approach to interrogate selected pathways. We screened phage-displayed libraries of structure-based E2 variants (E2Vs) to discover enzymes with enhanced affinity and specificity toward half of all RBR E3 ligases (ARIH1, ARIH2, ANKIB1, CUL9, HOIL1, HOIP, and RNF14). Collectively, these E2Vs allowed distinguishing actions of different cofunctioning E3s, obtaining high-resolution cryogenic Electron Microscopy (cryo-EM) structures of an RBR E3 in the context of a substrate-bound multiprotein complex, and profiling an endogenous RBR E3 response to an extracellular stimulus. Overall, we anticipate that E2V technology will be a generalizable tool to enable in-depth mechanistic and structural analysis of E3 ligase functions, and mapping their activity states and protein partners in cellular signaling cascades.

Indexed as

Ubiquitin-Conjugating EnzymesUbiquitin-Protein LigasesCryoelectron MicroscopyHEK293 CellsHumansUBE2L3 protein, humanUbiquitin-Conjugating EnzymesUbiquitin-Protein Ligasesactivity-based probeE2E3 ligaseRBRubiquitin

Identifiers

PMID41481455
PMCPMC12773759

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.