Evidence map›Paper›PMID 41481194›Full record

ArticleJournal of chemical information and modeling2026

Osimertinib's Proton-Catalyzed, Pseudoconcerted EGFR Inhibition Guides Next-Generation Inhibitor Design.

Akihiro Kondo, Kazuhiro J Fujimoto, Shin-Ichi Koda, Shinji Saito, Takeshi Yanai

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Akihiro KondoDepartment of Chemistry, Graduate School of Science, Nagoya University, Furocho, Chikusa, Nagoya 464-8601, Japan.
Kazuhiro J FujimotoDepartment of Chemistry, Graduate School of Science, Nagoya University, Furocho, Chikusa, Nagoya 464-8601, Japan.ORCID 0000-0003-0286-3646
Shin-Ichi KodaDepartment of Theoretical and Computational Molecular Science, Institute for Molecular Science, Myodaiji, Okazaki, Aichi 444-8585, Japan.ORCID 0000-0003-0993-3678
Shinji SaitoDepartment of Theoretical and Computational Molecular Science, Institute for Molecular Science, Myodaiji, Okazaki, Aichi 444-8585, Japan.ORCID 0000-0003-4982-4820
Takeshi YanaiDepartment of Chemistry, Graduate School of Science, Nagoya University, Furocho, Chikusa, Nagoya 464-8601, Japan.ORCID 0000-0003-3933-8546

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Third-generation inhibitors such as osimertinib irreversibly inhibit the epidermal growth factor receptor tyrosine kinase (EGFR-TK) via Michael addition to Cys797, yet the mechanism of covalent bond formation remains unsettled. Here, density functional theory-level quantum mechanics/molecular mechanics (QM/MM) computations delineate a proton-catalyzed, pseudoconcerted mechanism for covalent inhibition of EGFR by osimertinib. The computed Gibbs energy profile features a single transition state (TS1) in which Cys797 deprotonation, nucleophilic attack at osimertinib's Michael acceptor, and protonation of the acceptor's carbonyl oxygen by osimertinib's terminal aliphatic aminium occur simultaneously, in contrast to previous stepwise proposals. Natural bond orbital (NBO) analysis shows that carbonyl O-protonation attenuates carbonyl π bonding, increases β-carbon (C

Indexed as

AcrylamidesAniline CompoundsDrug DesignErbB ReceptorsProtein Kinase InhibitorsProtonsCatalysisHumansIndolesMolecular Dynamics SimulationPyrimidinesThermodynamicsAcrylamidesAniline CompoundsEGFR protein, humanErbB ReceptorsIndolesosimertinibProtein Kinase InhibitorsProtonsPyrimidines

Identifiers

PMID41481194
PMCPMC12848964

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.