Evidence map›Paper›PMID 41480880›Full record

ArticleDatabase : the journal of biological databases and curation2025

An approach to making life sciences FAIR-FAIR-DS as a tool for Aspergillus fumigatus.

Sibbe Bakker, Mariana Santos-Silva, Johanna Rhodes, Sijmen Schoustra, Bas Zwaan, Anna Fensel

Abstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Sibbe BakkerLaboratory of Genetics, Wageningen University & Research, Droevendaalsesteeg 1 Building 107 6708 PB Wageningen, the Netherlands.
Mariana Santos-SilvaLaboratory of Genetics, Wageningen University & Research, Droevendaalsesteeg 1 Building 107 6708 PB Wageningen, the Netherlands.ORCID 0000-0001-5251-4431
Johanna RhodesDepartment of Medical Microbiology, Radboudumc, Geert Grooteplein Zuid 10 6525 GA Nijmegen, Nijmegen, the Netherlands.
Sijmen SchoustraLaboratory of Genetics, Wageningen University & Research, Droevendaalsesteeg 1 Building 107 6708 PB Wageningen, the Netherlands.
Bas ZwaanLaboratory of Genetics, Wageningen University & Research, Droevendaalsesteeg 1 Building 107 6708 PB Wageningen, the Netherlands.
Anna FenselWageningen Data Competence Center (WDCC), Wageningen University & Research, Droevendaalsesteeg 4, 6708 PB Wageningen, the Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Adhering to Findable, Accessible, Interoperable, and Reusable (FAIR) principles ensures that data is shared in ways that maximize reusability. However, not all researchers in biological fields, particularly those that rely on manual data entry, have embraced these principles, particularly when it comes to adhering to relevant ontologies. This hampers data sharing due to missing metadata, limiting reuse. This study addresses the production of FAIR data for mycology, a field characterized by high manual data entry demands. For this field, we propose specific data standards to enhance reusability in the Aspergillus fumigatus field and beyond, emphasizing their importance for fostering collaboration and accelerating scientific progress. We adopted the FAIR-Data Station (FAIR-DS) solution to this new domain and demonstrated how to improve the FAIRification of new types of complex life science datasets. For individual researchers, FAIR-DS simplifies data uploads to repositories while ensuring critical metadata is preserved. Following our approach, we have converted two types of datasets-spore counts and a compost monitoring programme on Dutch farms-into FAIR ontology-compliant formats and published them as open data.

Indexed as

Aspergillus fumigatusBiological Science DisciplinesDatabases, FactualInformation Dissemination

Identifiers

PMID41480880
PMCPMC12757778

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.