Evidence map›Paper›PMID 41480593›Full record

ArticleNAR genomics and bioinformatics2025

IRESeek: structure-informed deep learning method for accurate identification of internal ribosome entry sites in circular RNAs.

Feng Zhang, Heqin Zhu, Jiayin Gao, Jie Hu, Ke Chen, Shaohua Kevin Zhou, Peng Xiong

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in NAR genomics and bioinformatics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Feng ZhangSchool of Biomedical Engineering, Division of Life Sciences and Medicine, University of Science and Technology of China (USTC), Anhui 230026, China.ORCID 0009-0001-5314-0125
Heqin ZhuSchool of Biomedical Engineering, Division of Life Sciences and Medicine, University of Science and Technology of China (USTC), Anhui 230026, China.
Jiayin GaoSchool of Biomedical Engineering, Division of Life Sciences and Medicine, University of Science and Technology of China (USTC), Anhui 230026, China.
Jie HuSchool of Biomedical Engineering, Division of Life Sciences and Medicine, University of Science and Technology of China (USTC), Anhui 230026, China.
Ke ChenSchool of Biomedical Engineering, Division of Life Sciences and Medicine, University of Science and Technology of China (USTC), Anhui 230026, China.ORCID 0000-0003-0433-5580
Shaohua Kevin ZhouSchool of Biomedical Engineering, Division of Life Sciences and Medicine, University of Science and Technology of China (USTC), Anhui 230026, China.
Peng XiongSchool of Biomedical Engineering, Division of Life Sciences and Medicine, University of Science and Technology of China (USTC), Anhui 230026, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The internal ribosome entry site (IRES) is a special type of RNA

Indexed as

Deep LearningInternal Ribosome Entry SitesRNA, CircularHumansNucleic Acid ConformationInternal Ribosome Entry SitesRNA, Circular

Identifiers

PMID41480593
PMCPMC12754787

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.