ArticlebioRxiv : the preprint server for biology2025
The complete genome of a songbird.
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Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Authors and funding
49 authors.
Giulio FormentiThe Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, 10065 USA.ORCID 0000-0002-7554-5991
Nivesh JainThe Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, 10065 USA.ORCID 0000-0002-8134-2904
Jack A MedicoThe Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, 10065 USA.ORCID 0000-0003-1855-0855
Marco SollittoThe Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, 10065 USA.
Dmitry AntipovGenome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institute of Health, Bethesda, MD, 20892, USA.ORCID 0000-0002-6087-0660
Suziane BarcellosThe Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, 10065, USA.ORCID 0000-0003-2863-9976
Matthew BieglerThe Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, 10065, USA.ORCID 0000-0003-4331-9890
Inês BorgesCentre for Molecular Biodiversity Research, Leibniz Institute for the Analysis of Biodiversity Change, Zoologisches Forschungsmuseum A. Koenig, Adenauerallee 160, D-53113 Bonn, Germany.ORCID 0009-0003-7740-2665
J King ChangEvolution & Ecology Research Centre, School of Biotechnology and Biomolecular Sciences, Faculty of Science, University of New South Wales, Sydney, NSW 2052, Australia.ORCID 0009-0007-8748-4368
Ying ChenThe Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, 10065 USA.ORCID 0000-0002-2237-6426
Haoyu ChengDepartment of Biomedical Informatics and Data Science, Yale School of Medicine, New Haven, CT, 06520 USA.
Helena ConceiçãoCentro de Oncologia Molecular, Hospital Sirio Libanes, Sao Paulo, 01308-050, Brazil.ORCID 0000-0003-3876-5407
Matthew DavenportThe Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, 10065, USA.ORCID 0000-0002-5699-6295
Lorraine De OliveiraCentro de Oncologia Molecular, Hospital Sirio Libanes, Sao Paulo, 01308-050, Brazil.ORCID 0009-0007-3735-934X
Erick DuarteThe Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, 10065 USA.ORCID 0009-0009-1100-6583
Gillian DurhamField Research Center, The Rockefeller University, Millbrook, NY, 12545, USA.
Jonathan FennComputational and Molecular Evolutionary Biology Group, School of Life Sciences, Faculty of Medicine and Health Sciences, University of Nottingham, Nottingham, NG7 2RD, UK.ORCID 0000-0002-9255-6975
Niamh FordeDiscovery and Translational Sciences Department, Leeds Institute of Cardiovascular and Metabolic Medicine, School of Medicine, University of Leeds, Leeds, UK.ORCID 0000-0002-3539-9643
Pedro A GalanteCentro de Oncologia Molecular, Hospital Sirio Libanes, Sao Paulo, 01308-050, Brazil.ORCID 0000-0002-4820-4155
Kenji GerhardtDepartment of Molecular Genetics, The Ohio State University, Columbus, OH, USA, 43210.
Alice M GianiNash Family Department of Neuroscience & Friedman Brain Institute, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.ORCID 0000-0001-8805-7826
Simona GiuntaLaboratory of Genome Evolution, Department of Biology & Biotechnologies Charles Darwin, University of Rome "La Sapienza", Rome, Italy, 00185.
Juhyun KimGenome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institute of Health, Bethesda, MD, 20892, USA.ORCID 0000-0002-0321-9388
Aleksey KomissarovAglabx, Paphos, Cyprus.ORCID 0000-0001-6981-7316
Bonhwang KooThe Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, 10065 USA.ORCID 0000-0002-5181-6267
Sergey KorenGenome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institute of Health, Bethesda, MD, 20892, USA.
Denis LarkinDepartment of Comparative Biomedical Sciences, Royal Veterinary College, University of London, 4 Royal College St, London, UK NW10TU.
Chul LeeThe Laboratory of Neurogenetics of Language, The Rockefeller University, New York, NY, 10065, USA.ORCID 0000-0002-9403-0774
Heng LiDepartment of Data Science, Dana-Farber Cancer Institute, Boston, MA, 02215, USA.ORCID 0000-0003-4874-2874
Kateryna MakovaDepartment of Biology, Penn State University, University Park, Pennsylvania, 16802, USA.ORCID 0000-0002-6212-9526
Patrick MastersonNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.
Terence MurphyNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.
Kirsty McCaffreyThe Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, 10065 USA.ORCID 0009-0005-4760-6653
Rafael L V MercuriDepartment of Biomedical Informatics and Data Science, Yale School of Medicine, New Haven, CT, 06520 USA.ORCID 0000-0003-0223-3089
Yeojung NaDepartment of Molecular Genetics, The Ohio State University, Columbus, OH, USA, 43210.
Mary J O'ConnellComputational and Molecular Evolutionary Biology Group, School of Life Sciences, Faculty of Medicine and Health Sciences, University of Nottingham, Nottingham, NG7 2RD, UK.ORCID 0000-0002-1877-1001
Shujun OuDepartment of Molecular Genetics, The Ohio State University, Columbus, OH, USA, 43210.ORCID 0000-0001-5938-7180
Adam PhillippyGenome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institute of Health, Bethesda, MD, 20892, USA.ORCID 0000-0003-2983-8934
Marina PopovaAglabx, Paphos, Cyprus.ORCID 0009-0000-4472-0497
Arang RhieGenome Informatics Section, Center for Genomics and Data Science Research, National Human Genome Research Institute, National Institute of Health, Bethesda, MD, 20892, USA.ORCID 0000-0002-9809-8127
Francisco J Ruiz-RuanoCentre for Molecular Biodiversity Research, Leibniz Institute for the Analysis of Biodiversity Change, Zoologisches Forschungsmuseum A. Koenig, Adenauerallee 160, D-53113 Bonn, Germany.ORCID 0000-0002-5391-301X
Simona SecomandiThe Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, 10065 USA.
Linnéa SmedsDepartment of Biology, Penn State University, University Park, Pennsylvania, 16802, USA.ORCID 0000-0002-8415-9259
Alexander SuhCentre for Molecular Biodiversity Research, Leibniz Institute for the Analysis of Biodiversity Change, Zoologisches Forschungsmuseum A. Koenig, Adenauerallee 160, D-53113 Bonn, Germany.ORCID 0000-0002-8979-9992
Tatiana TilleyThe Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, 10065 USA.
Niki VontzouCentre for Molecular Biodiversity Research, Leibniz Institute for the Analysis of Biodiversity Change, Zoologisches Forschungsmuseum A. Koenig, Adenauerallee 160, D-53113 Bonn, Germany.
Paul D WatersEvolution & Ecology Research Centre, School of Biotechnology and Biomolecular Sciences, Faculty of Science, University of New South Wales, Sydney, NSW 2052, Australia.ORCID 0000-0002-4689-8747
Jennifer BalaccoThe Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, 10065 USA.ORCID 0000-0001-7102-1632
Erich D JarvisThe Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, 10065 USA.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Bird genomes are the smallest among amniotes, but remain challenging to assemble due to their structural complexity. This study presents the first fully phased, diploid, telomere-to-telomere (T2T) reference genome for the zebra finch (
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.