Evidence map›Paper›PMID 41478992›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2026

Rapid Exploratory Data Visualization for Cancer Genomics.

Kausik Regunath

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

1 author.

Kausik RegunathDepartment of Biological Sciences, Columbia University, New York, NY, USA. kr2424@columbia.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This section describes the development and use of a toolbox of software programs for rapid data visualization of large-scale high-throughput datasets such as those found in The Cancer Genome Atlas (TCGA) and other multidimensional datasets. While the toolboxes are described in the context of cancer genomics and long noncoding RNAs, they can be easily applied for the visualization of any large-scale dataset in the form of box plots. The front-end of the toolbox is a simple graphical user interface (GUI), while the customizable back-end holds the data and has numerous modules related to various computations needed for genomic analysis.

Indexed as

Computational BiologyData VisualizationGenomicsNeoplasmsSoftwareDatabases, GeneticHumansRNA, Long NoncodingUser-Computer InterfaceRNA, Long NoncodingCancer genomicsData visualizationGraphical user interface (GUI)Long noncoding RNAs

Identifiers

PMID41478992

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.