Evidence map›Paper›PMID 41476475›Full record

ArticleACS omega2025

Designing Potent HIV‑1 Protease Inhibitors Using Machine Learning and QSAR Approaches.

Saba Ali, Ismail Dwi Putra, Hathaichanok Chuntakaruk, Peter Wolschann, Phornphimon Maitarad, Thanyada Rungrotmongkol, Supot Hannongbua

Abstract read
In one paragraph

Article in ACS omega, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Saba AliCenter of Excellence in Computational Chemistry (CECC), Department of Chemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand.
Ismail Dwi PutraCenter of Excellence in Structural and Computational Biology, Department of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand.ORCID https://orcid.org/0000-0001-6469-2112
Hathaichanok ChuntakarukCenter for Artificial Intelligence in Medicine, Faculty of Medicine, Chulalongkorn University, Bangkok 10330, Thailand.
Peter WolschannInstitute of Theoretical Chemistry, University of Vienna, Vienna 1090, Austria.
Phornphimon MaitaradResearch Centre of Nano Science and Technology, Department of Chemistry, College of Science, Shanghai University, Shanghai 200444, China.ORCID https://orcid.org/0000-0003-0035-0070
Thanyada RungrotmongkolProgram in Bioinformatics and Computational Biology, Graduate School, Chulalongkorn University, Bangkok 10330, Thailand.ORCID https://orcid.org/0000-0002-7402-3235
Supot HannongbuaCenter of Excellence in Computational Chemistry (CECC), Department of Chemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand.ORCID https://orcid.org/0000-0001-9008-2748

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Acquired Immune Deficiency Syndrome (AIDS), caused by Human Immunodeficiency Virus type-1 (HIV-1), remains a global health crisis. Despite advances in antiretroviral therapy, drug resistance, particularly to protease inhibitors, persists as a significant challenge. Darunavir, a second-generation protease inhibitor, has reduced efficacy against resistant HIV-1 variants, underscoring the development of new inhibitors. This study combines machine learning (ML) and quantitative structure-activity relationship (QSAR) models to design potent HIV-1 protease inhibitors using phenol-based and polyphenol-based P2 ligands. QSAR models, including genetic function approximation (GFA), multiple linear regression (MLR), random forest (RF), gradient boosting regressor (GBR), and Extreme Gradient Boosting (XGBoost), were developed to analyze molecular descriptors. GBR exhibited the highest accuracy (

Identifiers

PMID41476475
PMCPMC12750266

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.