Evidence map›Paper›PMID 41473693›Full record

ArticleProceedings. IEEE International Conference on Bioinformatics and Biomedicine2021

A Conical Representation of Hydrogen Bond Geometry for Quantifying Bond Interactions.

Chesphongphach Buranasilp, Brian Y Chen

Abstract read
In one paragraph

Article in Proceedings. IEEE International Conference on Bioinformatics and Biomedicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Automatic Explanation of Protein-Protein Binding Mechanism: A Preliminary Study.Computational structural bioinformatics : international workshop, CSBW 2024, Boston, MA, USA, November 16, 2024, proceedings. Computational Structural Bioinformatics Workshop (2024 : Boston, Mass.) · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Chesphongphach BuranasilpDepartment of Computer Science, Lehigh University, Bethlehem, Pennsylvania.
Brian Y ChenDepartment of Computer Science, Lehigh University, Bethlehem, Pennsylvania.

Funding

Algorithmic identification of binding specificity mechanisms in proteinsR01GM123131 · NIGMS · LEHIGH UNIVERSITY · PI CHEN, BRIAN YUAN · 2019 to 2022
$1.1M
NIGMS NIH HHS R01 GM123131
6 · The paper itself

Abstract

We present a new three dimensional representation of hydrogen bond donors and acceptors as spherical cones. The conical representation describes the range of bond lengths and bond angles at which a hydrogen bond can form. We hypothesized that three dimensional intersections of these cones can predict the formation of hydrogen bonds and potentially their contribution to protein-protein interactions. As a result, this representation enables a new technique for identifying similarities in bond formation and bond geometry.

Identifiers

PMID41473693
PMCPMC12747321

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.