Evidence map›Paper›PMID 41472833›Full record

ArticleBiofilm2025

Accurate quantitation of antibiotic penetration through staphylococcal biofilms.

Lou Bin, David McGiffin, Thuy Nguyen, Lv Wang, Yao Sun, Lumei Ye, Meiling Han, Chengju Sheng, Tzong-Hsien Lee, Marie-Isabel Aguilar and 2 more

Abstract read
In one paragraph

Article in Biofilm, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Biofilm-Mediated Antimicrobial Resistance in PediatricAntibiotics (Basel, Switzerland) · 2026
    Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Lou BinDepartment of Laboratory Medicine, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang Province, 310003, China.
David McGiffinDepartment of Cardiothoracic Surgery, The Alfred and Monash University, Melbourne, Victoria, 3004, Australia.
Thuy NguyenInfection Program, Monash Biomedicine Discovery Institute, Department of Microbiology, Monash University, Clayton, Victoria, 3800, Australia.
Lv WangInfection Program, Monash Biomedicine Discovery Institute, Department of Microbiology, Monash University, Clayton, Victoria, 3800, Australia.
Yao SunDepartment of Laboratory Medicine, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, Zhejiang Province, 310003, China.
Lumei YeDepartment of Clinical Laboratory, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou Medical University-Monash Biomedicine Discovery Institute Alliance in Clinical and Experimental Biomedicine, Wenzhou, Zhejiang Province, 325000, China.
Meiling HanInfection Program, Monash Biomedicine Discovery Institute, Department of Microbiology, Monash University, Clayton, Victoria, 3800, Australia.
Chengju ShengDepartment of Materials Science and Engineering, Monash University, Melbourne, Victoria, 3800, Australia.
Tzong-Hsien LeeDepartment of Biochemistry and Molecular Biology, Monash University, Melbourne, Victoria, 3800, Australia.
Marie-Isabel AguilarDepartment of Biochemistry and Molecular Biology, Monash University, Melbourne, Victoria, 3800, Australia.
Anton Y PelegInfection Program, Monash Biomedicine Discovery Institute, Department of Microbiology, Monash University, Clayton, Victoria, 3800, Australia.
Yue QuInfection Program, Monash Biomedicine Discovery Institute, Department of Microbiology, Monash University, Clayton, Victoria, 3800, Australia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Objectives: Limited antimicrobial penetration is an important mechanism underlying antimicrobial resistance of biofilms and has often been incorrectly quantitated. We adopted a rationalized antibiotic agar-diffusion model to accurately interpret experimental results of a widely-accepted biofilm penetration assay, and to determine drug-related physiochemical properties impacting antimicrobial biofilm penetration. Methods: Staphylococcal reference strains and eight conventional antibiotics were selected for this study. A well-established biofilm penetration assay based on disk diffusion and colony biofilms was used. Sizes of the zone of inhibition (ZOI) were converted to concentrations of antibiotics, using linear regressions of squared radii of the ZOI on the natural logarithm of antibiotic concentrations. Biofilm penetration ratios were calculated by comparing concentrations of antibiotics reaching the agar surface with or without biofilm barriers. Multiple regression analysis was performed to assess the impact of antibiotic physicochemical properties, such as surface charge, on their biofilm penetration. Results: Ciprofloxacin and oxacillin showed great capacities in penetrating staphylococcal biofilms. Rifampicin penetrated biofilms at low rates of ∼20 %. Aminoglycosides showed strain- and agent-specific penetration ratios, with tobramycin showing the least penetration (17.8 % for Conclusions: Accurate quantitation of antibiotic biofilm penetration can be achieved using the transformed linear regression between the ZOI and antibiotic concentrations. Mathematical evidence was provided to support the importance of surface charge of antimicrobials on their biofilm penetration.

Indexed as

And penetrationAntimicrobial resistanceDisk diffusionExtracellular polymeric substance (EPS) matrixStaphylococcal biofilms

Identifiers

PMID41472833
PMCPMC12745984

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.