Evidence map›Paper›PMID 41472277›Full record

ArticleViruses2025

Long-Term Transcriptomic Reprogramming in Peripheral Blood Mononuclear Cells of Severe COVID-19 Survivors Reveals Pro-Oncogenic Signatures and Cancer-Associated Hub Genes.

Pelin Duru Cetinkaya, Ozgecan Kayalar, Vahap Eldem, Serap Argun Baris, Nurdan Kokturk, Selim Can Kuralay, Hadi Rajabi, Nur Konyalilar, Deniz Mortazavi, Seval Kubra Korkunc and 29 more

Abstract read
In one paragraph

Article in Viruses, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

39 authors.

Pelin Duru CetinkayaDepartment of Pulmonary Medicine, Faculty of Medicine, Cukurova University, Adana 01790, Türkiye.ORCID 0000-0002-4428-8590
Ozgecan KayalarDepartment of Biology, Faculty of Arts and Sciences, Cukurova University, Adana 01790, Türkiye.ORCID 0000-0001-9107-2381
Vahap EldemDepartment of Biology, Science Faculty, Istanbul University, Istanbul 34134, Türkiye.ORCID 0000-0003-3767-5661
Serap Argun BarisDepartment of Pulmonary Medicine, Faculty of Medicine, Kocaeli University, Kocaeli 41380, Türkiye.ORCID 0000-0002-4429-9441
Nurdan KokturkDepartment of Pulmonary Medicine, Faculty of Medicine, Gazi University, Ankara 06500, Türkiye.ORCID 0000-0002-2889-7265
Selim Can KuralayDepartment of Biology, Science Faculty, Istanbul University, Istanbul 34134, Türkiye.
Hadi RajabiKoc University Research Center for Translational Medicine (KUTTAM), School of Medicine, Koc University, Istanbul 34010, Türkiye.ORCID 0000-0001-6086-591X
Nur KonyalilarKoc University Research Center for Translational Medicine (KUTTAM), School of Medicine, Koc University, Istanbul 34010, Türkiye.ORCID 0000-0003-3693-6508
Deniz MortazaviKoc University Research Center for Translational Medicine (KUTTAM), School of Medicine, Koc University, Istanbul 34010, Türkiye.
Seval Kubra KorkuncKoc University Research Center for Translational Medicine (KUTTAM), School of Medicine, Koc University, Istanbul 34010, Türkiye.ORCID 0000-0003-2556-0760
Sinem ErkanKoc University Research Center for Translational Medicine (KUTTAM), School of Medicine, Koc University, Istanbul 34010, Türkiye.ORCID 0000-0002-6667-2980
Gizem Tuse AksoyKoc University Research Center for Translational Medicine (KUTTAM), School of Medicine, Koc University, Istanbul 34010, Türkiye.
Gul EyikudamaciKoc University Research Center for Translational Medicine (KUTTAM), School of Medicine, Koc University, Istanbul 34010, Türkiye.ORCID 0009-0004-9392-5826
Pelin Pinar DenizDepartment of Pulmonary Medicine, Faculty of Medicine, Cukurova University, Adana 01790, Türkiye.ORCID 0000-0002-9047-7608
Oya Baydar ToprakDepartment of Pulmonary Medicine, Faculty of Medicine, Cukurova University, Adana 01790, Türkiye.ORCID 0000-0001-7320-976X
Pinar Yildiz GulhanDepartment of Pulmonary Medicine, Faculty of Medicine, Duzce University, Duzce 81620, Türkiye.ORCID 0000-0002-5347-2365
Gulseren SagcanDepartment of Pulmonary Medicine, Altunizade Acibadem Hospital, Istanbul 34662, Türkiye.
Neslihan Kose KabilDepartment of Pulmonary Medicine, Faculty of Medicine, Yalova University, Yalova 77200, Türkiye.ORCID 0000-0001-5241-4043
Aysegul Tomruk ErdemDepartment of Pulmonary Medicine, Faculty of Medicine, Zonguldak Bulent Ecevit University, Zonguldak 67100, Türkiye.ORCID 0000-0002-5346-9107
Fusun FakiliDepartment of Pulmonary Medicine, Faculty of Medicine, Gaziantep University, Gaziantep 27310, Türkiye.
Onder OzturkDepartment of Pulmonary Medicine, Faculty of Medicine, Suleyman Demirel University, Isparta 32260, Türkiye.ORCID 0000-0001-8570-2172
Ilknur BasyigitDepartment of Pulmonary Medicine, Faculty of Medicine, Kocaeli University, Kocaeli 41380, Türkiye.ORCID 0000-0001-7706-9311
Hasim BoyaciDepartment of Biology, Science Faculty, Istanbul University, Istanbul 34134, Türkiye.
Emel AzakDepartment of Infectious Disease and Clinical Microbiology, Faculty of Medicine, Kocaeli University, Kocaeli 41380, Türkiye.
Tansu Ulukavak CiftciDepartment of Pulmonary Medicine, Faculty of Medicine, Gazi University, Ankara 06500, Türkiye.
Ipek Kivilcim OguzulgenDepartment of Pulmonary Medicine, Faculty of Medicine, Gazi University, Ankara 06500, Türkiye.ORCID 0000-0002-0535-5455
Hasan Selcuk OzgerDepartment of Infectious Diseases and Clinical Microbiology, Faculty of Medicine, Gazi University, Ankara 06500, Türkiye.
Pinar Aysert YildizDepartment of Infectious Diseases and Clinical Microbiology, Faculty of Medicine, Gazi University, Ankara 06500, Türkiye.
Ismail HantaDepartment of Pulmonary Medicine, Faculty of Medicine, Cukurova University, Adana 01790, Türkiye.ORCID 0000-0001-8610-2937
Ozlem AtaogluDepartment of Pulmonary Medicine, Faculty of Medicine, Duzce University, Duzce 81620, Türkiye.
Merve ErcelikDepartment of Pulmonary Medicine, Faculty of Medicine, Duzce University, Duzce 81620, Türkiye.
Caglar CuhadarogluDepartment of Pulmonary Medicine, Altunizade Acibadem Hospital, Istanbul 34662, Türkiye.
Hacer Kuzu OkurDepartment of Pulmonary Medicine, Altunizade Acibadem Hospital, Istanbul 34662, Türkiye.
Muge Meltem TorDepartment of Pulmonary Medicine, Faculty of Medicine, Zonguldak Bulent Ecevit University, Zonguldak 67100, Türkiye.
Esra Nurlu TemelDepartment of Infectious Diseases and Clinical Microbiology, Faculty of Medicine, Suleyman Demirel University, Isparta 32260, Türkiye.ORCID 0000-0003-4618-168X
Seval KulDepartment of Biostatistics, Faculty of Medicine, Gaziantep University, Gaziantep 27310, Türkiye.
Yıldız TutuncuDepartment of Immunology, Koc University Research Center for Translational Medicine (KUTTAM), School of Medicine, Koc University, Istanbul 34010, Türkiye.
Oya ItilDepartment of Pulmonary Medicine, Faculty of Medicine, Dokuz Eylul University, Izmir 35340, Türkiye.
Hasan BayramKoc University Research Center for Translational Medicine (KUTTAM), School of Medicine, Koc University, Istanbul 34010, Türkiye.ORCID 0000-0002-5236-766X

Funding

Turkish Thoracic Society BioProject PRJNA895325
6 · The paper itself

Abstract

This study examined the long-term transcriptomic reprogramming in peripheral blood mononuclear cells (PBMCs) of severe COVID-19 patients and its effects for cancer development. RNA sequencing was conducted on PBMCs obtained from healthy controls, COVID-19 patients without pneumonia, and COVID-19 patients exhibiting severe pneumonia one year post-infection. Differential gene expression analysis identified a sustained pro-oncogenic molecular signature, especially among severe COVID-19 patients. Functional enrichment analysis revealed a substantial enrichment of cancer-associated pathways, encompassing apoptosis, viral carcinogenesis, and transcriptional dysregulation. Notably, the autophagy-related gene SQSTM1/P62 was recognized as a distinctive hub gene within the severe COVID-19 patients, interacting with pivotal genes associated with inflammation, apoptosis, and cancer advancement. Survival analysis demonstrated that elevated expression of COVID-19-associated hub genes correlated with unfavorable prognosis in various cancer types, including adrenocortical carcinoma, bladder urothelial carcinoma, and brain lower-grade glioma. These findings indicate that severe COVID-19 infection may establish a systemic milieu favorable to cancer development or recurrence, highlighting the necessity of prolonged oncological monitoring in these patients. Finding specific molecular targets and pathways can help us understand how COVID-19 might be linked to a higher risk of cancer.

Indexed as

COVID-19Leukocytes, MononuclearNeoplasmsTranscriptomeAgedFemaleGene Expression ProfilingHumansMaleMiddle AgedPrognosisSARS-CoV-2Survivorsbioinformatics analysiscancer riskCOVID-19differentially expressed geneslong-term effectsPBMCstranscriptomics

Identifiers

PMID41472277
PMCPMC12737505

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