Evidence map›Paper›PMID 41470603›Full record

ArticlePlants (Basel, Switzerland)2025

Peas in Rouge: Tyrosine Supplementation Enhances RUBY Reporter Visibility in

Veronika Simonova, Elina Potsenkovskaia, Nikolai Kozlov, Alexandra Vanina, Elena Efremova, Kirill Smirnov, Anastasia Artemiuk, Anna Kiseleva, Anna Brynchikova, Zakhar Konstantinov and 1 more

Abstract read
In one paragraph

Article in Plants (Basel, Switzerland), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Veronika SimonovaPlant Biology and Biotechnology Department, Sirius University of Science and Technology, 1 Olympic Avenue, 354340 Sochi, Russia.ORCID 0000-0002-9037-4684
Elina PotsenkovskaiaPlant Biology and Biotechnology Department, Sirius University of Science and Technology, 1 Olympic Avenue, 354340 Sochi, Russia.ORCID 0000-0002-5045-2641
Nikolai KozlovKomarov Botanical Institute of the Russian Academy of Sciences, Professora Popova Street, 2, 197376 Saint Petersburg, Russia.ORCID 0009-0008-2845-6719
Alexandra VaninaDepartment of Genetics and Biotechnology, Faculty of Biology, Saint Petersburg State University, Universitetskaya nab., 7-9, 199034 Saint Petersburg, Russia.ORCID 0009-0006-9753-2004
Elena EfremovaDepartment of Genetics and Biotechnology, Faculty of Biology, Saint Petersburg State University, Universitetskaya nab., 7-9, 199034 Saint Petersburg, Russia.ORCID 0000-0002-2565-1155
Kirill SmirnovDepartment of Genetics and Biotechnology, Faculty of Biology, Saint Petersburg State University, Universitetskaya nab., 7-9, 199034 Saint Petersburg, Russia.ORCID 0000-0002-2875-3798
Anastasia ArtemiukDepartment of Genetics and Biotechnology, Faculty of Biology, Saint Petersburg State University, Universitetskaya nab., 7-9, 199034 Saint Petersburg, Russia.ORCID 0009-0008-4530-2092
Anna KiselevaPlant Biology and Biotechnology Department, Sirius University of Science and Technology, 1 Olympic Avenue, 354340 Sochi, Russia.ORCID 0000-0002-1425-7013
Anna BrynchikovaPlant Biology and Biotechnology Department, Sirius University of Science and Technology, 1 Olympic Avenue, 354340 Sochi, Russia.
Zakhar KonstantinovDepartment of Genetics and Biotechnology, Faculty of Biology, Saint Petersburg State University, Universitetskaya nab., 7-9, 199034 Saint Petersburg, Russia.ORCID 0000-0002-0825-9418
Varvara TvorogovaPlant Biology and Biotechnology Department, Sirius University of Science and Technology, 1 Olympic Avenue, 354340 Sochi, Russia.ORCID 0000-0002-0549-1457

Funding

Russian Science Foundation 24-26-20117
6 · The paper itself

Abstract

Genome modification of legumes, peas in particular, is accompanied by significant challenges. Establishing a reliable reporter system to identify tissue that expresses foreign DNA may help to optimize and develop transformation protocols for these species. The RUBY system, based on the synthesis of red betalain from tyrosine, offers a convenient solution for monitoring the efficiency of transgene introduction. To evaluate the effectiveness of RUBY application in pea tissue culture, we combined agrobacterial transformation with an in vitro cultivation system, inducing callus development. Transformed explants demonstrated RUBY pigmentation, but it disappeared during cultivation. We hypothesized that this issue is caused by tyrosine depletion. To check this suggestion, we tested whether tyrosine supplementation could maintain RUBY coloring. In the later stages, pigmentation still could not be preserved. However, our modified conditions increased the percent of colored shoot apex explants during the early cultivation stages. Thus, it is likely that some explants transformed with the RUBY cassette do not synthesize a sufficient amount of betalain due to the deficit of endogenous tyrosine. In this case, adding exogenous tyrosine would enhance betalain production and improve the detectability of tissues containing the RUBY cassette. These data can be used for the optimization of RUBY application conditions for peas and other species.

Indexed as

peaPisum sativumplant transformationreporter systemRUBY

Identifiers

PMID41470603
PMCPMC12736525

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.