ArticleScientific data2025
Chromosomal-level genome assembly of two dominant desert shrub species in Haloxylon (Amaranthaceae).
Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.
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Who cites it
2 citing papers in PubMed.
- Cloning and functional analysis of the HaNAC11 transcription factor in Haloxylon ammodendron.BMC plant biology · 2026Article
- Chromosomal-level genome assembly of two dominant desert shrub species in Haloxylon (Amaranthaceae).Scientific data · 2025Article
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Authors and funding
5 authors.
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Abstract
Haloxylon ammodendron and Haloxylon persicum are ecologically and economically important drought-tolerant plants, often referred to as "desert guardians" owing to their remarkable abilities to withstand conditions of drought and salinity. We conducted a chromosome-level genome assembly using PacBio HiFi long-read sequences and Hi-C technology in order to gain a deeper understanding of their adaptive mechanisms and resource potential. The final assembled genome sizes were 2.32 Gb (contig N50 = 5.11 Mb; Scaffolds N50 = 257.59 Mb) for H. ammodendron and 1.32 Gb (contig N50 = 9.55 Mb; Scaffolds N50 = 143.67 Mb) for H. persicum, with 97.84% and 95.45% of the respective sequences anchored to nine pseudochromosomes. The BUSCO integrity scores were 88.40% and 84.00% for H. ammodendron and H. persicum, respectively. Gene annotation revealed that H. ammodendron contained 69,844 protein-coding genes, while H. persicum had 66,859 protein-coding genes, with repeat elements constituting 57.42% and 52.88% of their genomes, respectively. The reference genomes of Haloxylon serve as invaluable resources for exploring the ecological and economic significance of desert plants.
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