Evidence map›Paper›PMID 41469401›Full record

ArticleNature communications2025

Autonomous biogenesis of all thirty proteins of the Escherichia coli translation machinery.

Matthaeus Schwarz-Schilling, Ilan Cohen, Aurore Dupin, Noa Avidan, Yoav Barak, Yoshihiro Shimizu, Shirley S Daube, Roy H Bar-Ziv

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Matthaeus Schwarz-SchillingDepartment of Chemical and Biological Physics, The Weizmann Institute of Science, Rehovot, Israel. matthaeus@weizmann.ac.il.ORCID http://orcid.org/0000-0001-8454-968X
Ilan CohenDepartment of Chemical and Biological Physics, The Weizmann Institute of Science, Rehovot, Israel.ORCID http://orcid.org/0009-0005-0241-4359
Aurore DupinDepartment of Chemical and Biological Physics, The Weizmann Institute of Science, Rehovot, Israel.ORCID http://orcid.org/0000-0002-1372-1144
Noa AvidanDepartment of Chemical and Biological Physics, The Weizmann Institute of Science, Rehovot, Israel.ORCID http://orcid.org/0000-0003-3198-9897
Yoav BarakDepartment of Chemical Research Support, The Weizmann Institute of Science, Rehovot, Israel.
Yoshihiro ShimizuLaboratory for Cell-Free Protein Synthesis, RIKEN Center for Biosystems Dynamics Research (BDR), IIB Bldg. S304, 6-7-1, Minatojima-minamimachi, Chuo-ku, Kobe, Hyogo, Japan.ORCID http://orcid.org/0000-0003-3499-1394
Shirley S DaubeDepartment of Chemical and Biological Physics, The Weizmann Institute of Science, Rehovot, Israel. shirley.daube@weizmann.ac.il.ORCID http://orcid.org/0000-0002-5566-9313
Roy H Bar-ZivDepartment of Chemical and Biological Physics, The Weizmann Institute of Science, Rehovot, Israel. roy.bar-ziv@weizmann.ac.il.ORCID http://orcid.org/0000-0002-7583-7900

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) 456967983European Molecular Biology Organization (EMBO) ALTF 131-2020United States Department of Defense | United States Navy | ONR | Office of Naval Research Global (ONR Global) N62909-22-1-2042
6 · The paper itself

Abstract

The cell-free biogenesis of the protein translation machinery is essential for the creation of a self-regenerating synthetic cell. Here, we demonstrate the autonomous and simultaneous biogenesis of all thirty proteins of the translation machinery of E. coli in a reconstituted transcription-translation system. We first establish self-regeneration of every translation protein by determining the threshold concentration required for its own synthesis from a synthetic gene coding for the protein, thereby demonstrating the functionality of all nascent proteins, separately. Simultaneous biogenesis of multiple translation proteins at their threshold results in delayed synthesis below detection levels. To achieve self-regeneration of multiple translation proteins, we induce boundary-free compartmentalization of the reaction by immobilizing the genes on a surface at high density. The co-localization of genes, molecular machinery, messenger RNA and nascent proteins at the surface create sufficient conditions to catalyze the simultaneous self-regeneration of sub-groups up to all thirty translation proteins, as measured by total internal reflection fluorescence on the surface. Our approach provides mechanistic insight and presents a general methodology for the biogenesis of cellular machines toward autonomous synthetic systems.

Indexed as

Escherichia coliEscherichia coli ProteinsProtein BiosynthesisCell-Free SystemRNA, MessengerTranscription, GeneticEscherichia coli ProteinsRNA, Messenger

Identifiers

PMID41469401
PMCPMC12847910

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.