Evidence map›Paper›PMID 41466317›Full record

ArticleEnvironmental microbiome2025

From farm to microbe: organic amendments and soil texture as drivers of soil Microbiome composition.

Maya Subberwal, Madeline Giles, Roy Neilson, David Roberts, Sandra Caul, Susan Mitchell, Umer Zeeshan Ijaz

Abstract read
In one paragraph

Article in Environmental microbiome, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Maya SubberwalJames Watt School of Engineering, University of Glasgow, Glasgow, G12 8QQ, UK.
Madeline GilesThe James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK. maddy.giles@hutton.ac.uk.
Roy NeilsonThe James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
David RobertsThe James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
Sandra CaulThe James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
Susan MitchellThe James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK.
Umer Zeeshan IjazJames Watt School of Engineering, University of Glasgow, Glasgow, G12 8QQ, UK. Umer.Ijaz@glasgow.ac.uk.

Funding

Biotechnology and Biological Sciences Research Council BB/T010649/1
6 · The paper itself

Abstract

backgroundUnderstanding how agricultural practices affect soil bacterial communities is vital to mitigating the negative impacts of intensive agriculture on soil health and preventing further deterioration of arable land. Increasing pressure on agricultural land necessitates careful management of our productive soil. This study investigates the interaction between organic amendments and soil texture in agricultural soils (n = 93) used for arable production, using a 16S rRNA-sequencing based microbial community analysis. Amendments include slurry, digestate, and farmyard manure. Additionally, soil physicochemical parameters were collected to explore the drivers of patterns of soil microbial diversity.

resultsMicrobial community composition was significantly influenced by organic amendments and soil texture, which both exerted distinct selective pressures. Analysis using 16S rRNA-sequencing and advanced modelling identified significant factors affecting community structure, including soil calcium levels, the crop grown one year previously, loss on ignition (LOI), and farm ID. The genus Candidatus Nitrosotalea was found to be positively associated with application of farmyard manure, while genus AD3 (phyla Chloroflexi) was found to be negatively associated with application of digestate and slurry.

conclusionsThe results highlight the importance of considering multiple, interacting factors when trying to establish how agricultural practice affects soil microbial communities. Our findings underscore the need for tailored management strategies - specific to the local environment and available resources - to promote soil health.

Indexed as

16S rRNACore microbiomeOrganic amendmentsSoil microbial diversitySoil texture

Identifiers

PMID41466317
PMCPMC12752172

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.