Evidence map›Paper›PMID 41465192›Full record

ArticleGenes2025

Genomic and Phenotypic Landscape of Antibiotic Resistance in Gut Lactic Acid Bacteria from Livestock Environments.

Anna Mikołajczuk-Szczyrba, Karolina Wnęk-Auguścik, Paulina Średnicka, Dziyana Shymialevich, Ewelina Jaroszewska, Adrian Wojtczak, Agnieszka Zapaśnik, Joanna Bucka-Kolendo, Hanna Cieślak, Justyna Nasiłowska

Abstract read
In one paragraph

Article in Genes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Anna Mikołajczuk-SzczyrbaDepartment of Microbiology, Prof. Waclaw Dabrowski Institute of Agricultural and Food Biotechnology-State Research Institute, 36 Rakowiecka Street, 02-532 Warsaw, Poland.ORCID 0000-0002-7445-2849
Karolina Wnęk-AuguścikDepartment of Animal Environment Biology, Institute of Animal Sciences, Warsaw University of Life Sciences-SGGW, 8 Ciszewskiego Street, 02-786 Warsaw, Poland.ORCID 0000-0002-3200-2743
Paulina ŚrednickaDepartment of Microbiology, Prof. Waclaw Dabrowski Institute of Agricultural and Food Biotechnology-State Research Institute, 36 Rakowiecka Street, 02-532 Warsaw, Poland.ORCID 0000-0001-8597-301X
Dziyana ShymialevichDepartment of Microbiology, Prof. Waclaw Dabrowski Institute of Agricultural and Food Biotechnology-State Research Institute, 36 Rakowiecka Street, 02-532 Warsaw, Poland.ORCID 0000-0002-2474-283X
Ewelina JaroszewskaDepartment of Microbiology, Prof. Waclaw Dabrowski Institute of Agricultural and Food Biotechnology-State Research Institute, 36 Rakowiecka Street, 02-532 Warsaw, Poland.
Adrian WojtczakDepartment of Microbiology, Prof. Waclaw Dabrowski Institute of Agricultural and Food Biotechnology-State Research Institute, 36 Rakowiecka Street, 02-532 Warsaw, Poland.ORCID 0009-0005-5428-0815
Agnieszka ZapaśnikDepartment of Microbiology, Prof. Waclaw Dabrowski Institute of Agricultural and Food Biotechnology-State Research Institute, 36 Rakowiecka Street, 02-532 Warsaw, Poland.ORCID 0000-0002-5492-8352
Joanna Bucka-KolendoDepartment of Microbiology, Prof. Waclaw Dabrowski Institute of Agricultural and Food Biotechnology-State Research Institute, 36 Rakowiecka Street, 02-532 Warsaw, Poland.ORCID 0000-0002-8082-1153
Hanna CieślakDepartment of Microbiology, Prof. Waclaw Dabrowski Institute of Agricultural and Food Biotechnology-State Research Institute, 36 Rakowiecka Street, 02-532 Warsaw, Poland.
Justyna NasiłowskaDepartment of Microbiology, Prof. Waclaw Dabrowski Institute of Agricultural and Food Biotechnology-State Research Institute, 36 Rakowiecka Street, 02-532 Warsaw, Poland.ORCID 0000-0002-9114-2615

Funding

This research was funded by the Ministry of Agriculture and Rural Development of Poland agreement no. DRE.prz.070.1.2025
6 · The paper itself

Abstract

BACKGROUND/

objectivesThe widespread use of antibiotics in livestock has raised concerns about commensal gut bacteria, such as lactic acid bacteria (LAB), acting as reservoirs for antimicrobial resistance. This study aimed to characterize the antibiotic resistance profiles of LAB isolated from livestock feces by combining phenotypic susceptibility testing with whole-genome sequencing (WGS) to identify antibiotic resistance genes (ARGs) and their genomic context.

methodsFour LAB strains from farm animal fecal samples were subjected to antibiotic susceptibility testing for 9 antibiotics (ampicillin, gentamicin, kanamycin, clindamycin, chloramphenicol, erythromycin, streptomycin, tetracycline, and vancomycin) using MIC determinations. WGS was performed on each isolate to detect ARGs using curated databases and to determine the chromosomal or plasmid location of these genes.

resultsAll four isolates exhibited phenotypic resistance to at least one antibiotic class, most frequently to aminoglycosides. However, discrepancies between phenotype and genotype were noted: resistance to aminoglycosides was common despite the absence of known aminoglycoside-resistance genes, suggesting intrinsic, uptake-related mechanisms. In contrast, one strain carried the chromosomal

conclusionsThis study provides a detailed phenotypic and genomic insight into antibiotic resistance in gut-derived LAB from livestock. The findings highlight that commensal LAB can harbor clinically relevant ARGs-sometimes on mobile genetic elements-without always expressing corresponding resistance phenotypes. Such LAB may serve as a hidden reservoir for antibiotic resistance, raising the risk of ARG dissemination through the food chain. These results underscore the importance of vigilant monitoring and genomic screening of LAB, especially those considered for use in foods or feed, to ensure they do not contribute to the spread of antimicrobial resistance.

Indexed as

Drug Resistance, BacterialGastrointestinal MicrobiomeLactobacillalesLivestockAnimalsAnti-Bacterial AgentsFecesGenome, BacterialGenomicsMicrobial Sensitivity TestsPhenotypePlasmidsWhole Genome SequencingAnti-Bacterial Agentsantibiotic resistance genes (ARG)antimicrobial resistance (AMR)horizontal gene transferlactic acid bacteria (LAB)livestock microbiotaMIC testingwhole-genome sequencing (WGS)

Identifiers

PMID41465192
PMCPMC12732805

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.