Evidence map›Paper›PMID 41463418›Full record

ArticleBiology2025

Combination Ensemble and Explainable Deep Learning Framework for High-Accuracy Classification of Wild Edible Macrofungi.

Aras Fahrettin Korkmaz, Fatih Ekinci, Eda Kumru, Şehmus Altaş, Seyit Kaan Güneş, Ahmet Tunahan Yalçın, Mehmet Serdar Güzel, Ilgaz Akata

Abstract read
In one paragraph

Article in Biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Aras Fahrettin KorkmazFaculty of Health Sciences Nutrition, Dietetics Department, Şirinevler Campus, İstanbul Kültür University, 34191 Istanbul, Türkiye.ORCID 0000-0002-3827-3018
Fatih EkinciInstitute of Artificial Intelligence, Ankara University, 06100 Ankara, Türkiye.ORCID 0000-0002-1011-1105
Eda KumruGraduate School of Natural and Applied Sciences, Ankara University, 06830 Ankara, Türkiye.
Şehmus AltaşDepartment of Computer Engineering, Faculty of Engineering, Ankara University, 06830 Ankara, Türkiye.
Seyit Kaan GüneşArtificial Intelligence and Data Engineering, Faculty of Engineering, Ankara University, 06830 Ankara, Türkiye.ORCID 0009-0006-9548-2568
Ahmet Tunahan YalçınArtificial Intelligence and Data Engineering, Faculty of Engineering, Ankara University, 06830 Ankara, Türkiye.ORCID 0009-0006-5482-4736
Mehmet Serdar GüzelDepartment of Computer Engineering, Faculty of Engineering, Ankara University, 06830 Ankara, Türkiye.ORCID 0000-0002-3408-0083
Ilgaz AkataDepartment of Biology, Faculty of Science, Ankara University, 06100 Ankara, Türkiye.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Accurate identification of wild edible macrofungi is essential for biodiversity conservation, food safety, and ecological sustainability, yet remains challenging due to the morphological similarity between edible and toxic species. In this study, a curated dataset of 24 wild edible macrofungi species was analyzed using six state-of-the-art convolutional neural networks (CNNs) and four ensemble configurations, benchmarked across eight evaluation metrics. Among individual models, EfficientNetB0 achieved the highest performance (95.55% accuracy), whereas MobileNetV3-L underperformed (90.55%). Pairwise ensembles yielded inconsistent improvements, highlighting the importance of architectural complementarity. Notably, the proposed Combination Model, integrating EfficientNetB0, ResNet50, and RegNetY through a hierarchical voting strategy, achieved the best results with 97.36% accuracy, 0.9996 AUC, and 0.9725 MCC, surpassing all other models. To enhance interpretability, explainable AI (XAI) methods Grad-CAM, Eigen-CAM, and LIME were employed, consistently revealing biologically meaningful regions and transforming the framework into a transparent decision-support tool. These findings establish a robust and scalable paradigm for fine-grained fungal classification, demonstrating that carefully engineered ensemble learning combined with XAI not only advances mycological research but also paves the way for broader applications in plant recognition, spore analysis, and large-scale vegetation monitoring from satellite imagery.

Indexed as

deep learningedible mushroomensemble modelsexplainable AIspecies classification

Identifiers

PMID41463418
PMCPMC12729728

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.