Evidence map›Paper›PMID 41462099›Full record

ArticleBMC plant biology2025

Evaluating the accumulation of organic acids and fatty acids under different environmental stresses in Dendrobium nobile.

Ruoxi Zhao, Shou Yan, Yadong Hu, Dan Rao, Ze Chun, Shigang Zheng

Abstract read
In one paragraph

Article in BMC plant biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ruoxi ZhaoChengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610213, China.
Shou YanChengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610213, China.
Yadong HuChengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610213, China.
Dan RaoChengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610213, China.
Ze ChunChengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610213, China.
Shigang ZhengChengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, 610213, China. zhengsg@cib.ac.cn.

Funding

National Natural Science Foundation of China 32100305Sichuan Provincial Science and Technology Support Program 2021YFYZ0012Sichuan Provincial Science and Technology Support Program 2023NSFSC1281
6 · The paper itself

Abstract

backgroundOrganic acids and fatty acids are important functional ingredients for Dendrobium nobile Lindl., a valuable medicinal plant. To improve the quality of D. nobile herb, it is necessary to evaluate the effects of biotic and abiotic stresses on the accumulation of organic acids and fatty acids.

resultsMetabolomic and transcriptomic analysis revealed that drought and black spot stresses enhanced the accumulation of both organic acids and fatty acids. Under drought stress, up-regulated DnGDC, DnMDHC, and DnPPDK2 and increased phosphoenolpyruvate, aminobutanoate, and methoxy-indole-3-acetic acid were core to the accumulation of organic acids. Up-regulated of DnKCS2L2, DnACPDC1, and DnPHGP and increased vaccenic acid and linolelaidic acid were core to the accumulation of fatty acids. Under black spot stress, up-regulated DnCATIA, DnGHPR, and DnALD22A1 and increased abscisic acid, indole-3-acetic acid-aspartate, and arabidopyl shikimic acid were core for accumulation of organic acids. Upregulated DnKCS4L, DnADCP17, and DnADHL4 and increased oxooctadecadienoic acid, hydroperoxyoctadecadienoic acid, and hydroxyoctadecatrienoic acid were core for accumulation of fatty acids. Some other genes related to signal transduction (DnDSTKL and DnSERK1), transcriptional regulation (DnSRM1L2, DnCCR4N9, DnMYB97, and DnERF014L), translational regulation (DnMRF9C, DnDMG1, DnSHL2, and DnSCC1.1), and posttranslational regulation (DnDNAJC76, DnAED3L, and DnDNAJC3) are also involved in the improving process. They formed a complete genome-wide regulatory network for the accumulation of organic acids and fatty acids under drought and black spot stresses.

conclusionsA series of key biosynthesis and regulating genes are up-regulated to increase some specific organic acids and fatty acids, which contributes to the accumulation of total contents under drought and black spot stresses in D. nobile.

Indexed as

DendrobiumFatty AcidsStress, PhysiologicalGene Expression Regulation, PlantFatty AcidsBlack spotDroughtHPLC-MS/MSMedicinal plantRNA-seqStress

Identifiers

PMID41462099
PMCPMC12859928

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.